View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_3 (Length: 455)
Name: NF10015_3
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_3 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 132 - 455
Target Start/End: Original strand, 31564316 - 31564649
Alignment:
| Q |
132 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctagttctaatggacaaaccggcattacttcttca |
231 |
Q |
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| T |
31564316 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca |
31564415 |
T |
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| Q |
232 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564416 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
31564515 |
T |
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| Q |
328 |
gaatttatacaggtatttcaatttttac------atgtaaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg |
421 |
Q |
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| T |
31564516 |
gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg |
31564615 |
T |
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| Q |
422 |
tggattgatgtatttgaacttatacagtcatatt |
455 |
Q |
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| T |
31564616 |
tggattgatatatttgaacttatacactcatatt |
31564649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 227 - 391
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
| Q |
227 |
cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca |
322 |
Q |
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| T |
33416536 |
cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca |
33416437 |
T |
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| Q |
323 |
gatttgaatttatacaggtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt |
391 |
Q |
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| T |
33416436 |
gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt |
33416366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
| Q |
141 |
agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctagttctaatggacaaaccggcattacttcttcagacaaagg |
239 |
Q |
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|||||||||||||| |||||||||||||||||||| | | ||||||||| | |||||| ||||||||||||||||| ||||| | ||||| |||| |
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| T |
33385837 |
agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg |
33385738 |
T |
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| Q |
240 |
ctcgagtaatggtttcaatttcatcttattt |
270 |
Q |
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| T |
33385737 |
cttgagcaaaggttgcaatttcatcttattt |
33385707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
| Q |
144 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct |
198 |
Q |
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| T |
33416592 |
acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct |
33416538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
| Q |
156 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctagttctaatggacaaac |
215 |
Q |
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| T |
33281376 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
33281320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
| Q |
156 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctagttctaatggacaaac |
215 |
Q |
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| T |
33302003 |
tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac |
33301947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 236 - 390
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
| Q |
236 |
aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat |
331 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |
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| T |
30653203 |
aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac |
30653301 |
T |
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| Q |
332 |
ttatacaggtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt |
390 |
Q |
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| T |
30653302 |
ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt |
30653360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
30 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgtagtcagcaccacagccagtgaacgagca |
129 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 144 - 273
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
| Q |
144 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctagttctaatggacaaaccggcattacttcttcagacaaaggctcg |
243 |
Q |
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| T |
17443374 |
acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg |
17443473 |
T |
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| Q |
244 |
agtaatggtttcaatttcatcttatttgct |
273 |
Q |
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| T |
17443474 |
accaaaggttgcaatttcatcttatttgct |
17443503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 12876 - 12932
Alignment:
| Q |
156 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctagttctaatggacaaac |
215 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||| |
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| T |
12876 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
12932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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