View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_4 (Length: 453)
Name: NF10015_4
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_4 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 69 - 442
Target Start/End: Complemental strand, 32255485 - 32255113
Alignment:
| Q |
69 |
aatgaaaaattaatgttacaaaattgatttgagttaattgtaggatggtctgtgtttatatttatatatgtatgcataaatgtgtttgaacaataattta |
168 |
Q |
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| T |
32255485 |
aatgaaaaattaatgttacaaaattgatttgagttaattgtagagtggtctttgtttatatttatatatgtatgcataaatgtgtttgaacaataattta |
32255386 |
T |
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| Q |
169 |
aagcttacatgtttggagacaaaacttcaaatttcatatttaaggtagaattattctagagacaaaataactctacttgataacaccaaaagatgtcatt |
268 |
Q |
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| T |
32255385 |
aagcttacatgtttggagacaaaacttcaaatttcatatttaagctagaattattctggagacaaaataactctacttgataacaccaaaagatgtcatt |
32255286 |
T |
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| Q |
269 |
caattctgtgtcaaaaatatttttggacctcacaaaagccactgaaatgatttaaacattaatggttacttgaatgctcttgctctagtatttggctgag |
368 |
Q |
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| T |
32255285 |
caattctgtgtcaaaaatattttt-gacctcacaaaaggcactaaaatgatttaaacattaatggttacttgaatgctcttactctagtatttggctgag |
32255187 |
T |
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| Q |
369 |
ttcaaatacttggaaggtaaatattgaactttcagagaataaattttaacatcaccagtcaccaccctttctgt |
442 |
Q |
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| T |
32255186 |
ttcaaatacttgcaaggtaaatattgaactttcagagaataaattttaacatcaccagtcactaccctttctgt |
32255113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 32252437 - 32252502
Alignment:
| Q |
13 |
gttagagatatcgtctacaagatatataatgttcatattataaattaaagagtttaaatgaaaaat |
78 |
Q |
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| T |
32252437 |
gttagagatatcgtctacaagatatataatgttcatattataaattaaagagtttaaatgaaaaat |
32252502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 32250625 - 32250577
Alignment:
| Q |
369 |
ttcaaatacttggaaggtaaatattgaactttcagagaataaattttaa |
417 |
Q |
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| T |
32250625 |
ttcaaataactggaaggtaaatattgaactttcagagcataaattttaa |
32250577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 32244870 - 32244832
Alignment:
| Q |
379 |
tggaaggtaaatattgaactttcagagaataaattttaa |
417 |
Q |
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| T |
32244870 |
tggaaggtaaatactgaactttcagagcataaattttaa |
32244832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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