View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_5 (Length: 438)
Name: NF10015_5
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 32253138 - 32252700
Alignment:
| Q |
1 |
cagggtatgcataaaactaat-atttaaccaatgtgtacatttctatgatgtgataagtcaaattaatgaaatttaatgaactaatcaataacatgtact |
99 |
Q |
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| T |
32253138 |
cagggtatgcataaaactaattatttaaccaatgtgtacatttctatgatgtgataagttaaattaatgaaatttaatgaactaatcaataacatgtact |
32253039 |
T |
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| Q |
100 |
atgcagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaag |
199 |
Q |
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| T |
32253038 |
atgcagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaag |
32252939 |
T |
|
| Q |
200 |
gtaacgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32252938 |
gtaacgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttga |
32252839 |
T |
|
| Q |
300 |
gtatgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggcctt |
399 |
Q |
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| T |
32252838 |
gtatgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggcctt |
32252739 |
T |
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| Q |
400 |
cgtccacgtgatgtcactcaaatcaagttcagtggaaac |
438 |
Q |
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| T |
32252738 |
cgtccacgtgatgtcactcaaatcaagttcagtggaaac |
32252700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 103 - 438
Target Start/End: Complemental strand, 32242455 - 32242120
Alignment:
| Q |
103 |
cagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggta |
202 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32242455 |
cagaatggcatatatgctccacactggaacatcaacgccaacagccttttgtacgtgattagaggacaaggaagagttaggatagtgaactgccaaggta |
32242356 |
T |
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| Q |
203 |
acgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagta |
302 |
Q |
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| T |
32242355 |
acgcagtgtttgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagta |
32242256 |
T |
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| Q |
303 |
tgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgt |
402 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||||||||| |
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| T |
32242255 |
tgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgtgaggttcttgaaaatgctttcggccttcgt |
32242156 |
T |
|
| Q |
403 |
ccacgtgatgtcactcaaatcaagttcagtggaaac |
438 |
Q |
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| T |
32242155 |
ccacgtgatgtcactcaaatcaagttcagtggaaac |
32242120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 103 - 438
Target Start/End: Complemental strand, 32248285 - 32247950
Alignment:
| Q |
103 |
cagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggta |
202 |
Q |
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| T |
32248285 |
cagaatggcatatatgctccacactggaacatcaacgccaacagccttttgtacgtgattagaggacaaggaagagttaggatagtgaactgccaaggca |
32248186 |
T |
|
| Q |
203 |
acgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagta |
302 |
Q |
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| T |
32248185 |
acgcggtgttcgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagta |
32248086 |
T |
|
| Q |
303 |
tgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgt |
402 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||| ||||||||| |
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| T |
32248085 |
tgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgt |
32247986 |
T |
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| Q |
403 |
ccacgtgatgtcactcaaatcaagttcagtggaaac |
438 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32247985 |
ccacgtgatgtcactcaaatcaagttcagtggaaac |
32247950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 400
Target Start/End: Original strand, 30605327 - 30605627
Alignment:
| Q |
100 |
atgcagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaag |
199 |
Q |
| |
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||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||| ||| |
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| T |
30605327 |
atgcagaatggtatatatgctccacactggaccgtgaacgccaacagcctaatgtacgccctaacaggagaaggaagagttaggatagtgaactgtgaag |
30605426 |
T |
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| Q |
200 |
gtaacgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttga |
299 |
Q |
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| T |
30605427 |
gaaacgccgtgttcgacgactgggtgagaaagggacagatggtggtggtaccacagaactttgtggtggtgcagcaagctggagaggaagaagcatttga |
30605526 |
T |
|
| Q |
300 |
gtatgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggcctt |
399 |
Q |
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||| | |||||||||||||| ||| |||| |||||| | |||| ||| |||| ||||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
30605527 |
gtacatagtgttcaagacaaatgacggagcttctgttaacaatgtaaagtaggtgttcagggccactcctgcagaggttcttgcaaatgtttttggcctt |
30605626 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
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| |
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| T |
30605627 |
c |
30605627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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