View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10015_7 (Length: 383)

Name: NF10015_7
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10015_7
NF10015_7
[»] chr3 (2 HSPs)
chr3 (18-383)||(51150526-51150877)
chr3 (18-383)||(51162827-51163178)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 51150877 - 51150526
Alignment:
Q  18 aaaaaataggcaaattagaaagtgctattacnnnnnnnnccctaacaaaatttcacgaacatgttattgatataattaaattcagtaattaactatttga 117  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  51150877 aaaaaataggcaaattagaaagtgctattacttttttt-ccctaacaaaatttcacgaacatgttattgatataattaa-------------ctatttga 51150792  T
Q  118 gttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtnnnnnnnnncta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  51150791 gttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtaaaagaaaacta 51150692  T
Q  218 ggatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcgaaatctatgatgc 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51150691 ggatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcaaaatctatgatgc 51150592  T
Q  318 tgtcactaggagtatagcctggattttgaagaagagggttaagttcaaaagaatttggtatgatta 383  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51150591 tatcactaggagtatagcctggattttgaagaagagggttaagttcaaaagaatttggtatgatta 51150526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 51163178 - 51162827
Alignment:
Q  18 aaaaaataggcaaattagaaagtgctattacnnnnnnnnccctaacaaaatttcacgaacatgttattgatataattaaattcagtaattaactatttga 117  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  51163178 aaaaaataggcaaattagaaagtgctattacttttttt-ccctaacaaaatttcacgaacatgttattgatataattaa-------------ctatttga 51163093  T
Q  118 gttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtnnnnnnnnncta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  51163092 gttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctctagtaaaagaaaacta 51162993  T
Q  218 ggatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcgaaatctatgatgc 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51162992 ggatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctgcaaaatctatgatgc 51162893  T
Q  318 tgtcactaggagtatagcctggattttgaagaagagggttaagttcaaaagaatttggtatgatta 383  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51162892 tatcactaggagtatagcctggattttgaagaagagggttaagttcaaaagaatttggtatgatta 51162827  T

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