View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_8 (Length: 383)
Name: NF10015_8
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_8 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 3096477 - 3096840
Alignment:
| Q |
8 |
gttgtcaattgaattagaccttaaagacatgtgaaataatatattttaaattatttaaaatttacacacttttggacaaaatgttacaggaaaaatggga |
107 |
Q |
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| T |
3096477 |
gttgtcaattgaattagaccttaaagacatgtgaaataatatattttaaattatttaaaatttacacacttttggacaaaatgttacaggaaaaatggga |
3096576 |
T |
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| Q |
108 |
tatattnnnnnnntcatctgaattaaagaccaatgatctaattcttttatatcattatacctttaattaataaataatatgttttcgggcatgacctaat |
207 |
Q |
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| T |
3096577 |
tatattaaaaaaatcatctgaattaaagaccaatgatctaattcttttatatcattatacctttaattaataaataatatgttttcgggcatgacctaat |
3096676 |
T |
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| Q |
208 |
aaaagaatgtatttagataagtttgatgttttcaacttttgaaattcttttgatagaaggaaattgttgtgggaataggaattgaccaagtcaaaagctg |
307 |
Q |
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| T |
3096677 |
aaaagaatgtatttagataagtttgatgttttcaacttttgaaattcttttgatagaaggaaattgttgtgggaataggaattgaccaagtcaaaagctg |
3096776 |
T |
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| Q |
308 |
tcttctatatatgttggtttctcccttcnnnnnnnnnntatgtttgtttctaatttctagtata |
371 |
Q |
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| T |
3096777 |
tcttctatatatgttggtttctcccttcaaaaaaaatatatgtttgtttctaatttctagtata |
3096840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 4546444 - 4546205
Alignment:
| Q |
12 |
tcaattgaattagaccttaaagacatgtgaaataatatattttaaattatttaaaatttacacacttttggacaaaatgttacaggaaaaa-tgggatat |
110 |
Q |
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| T |
4546444 |
tcaattgagttagaccttataaacatcttaaaaaatat--tttaaattatacacaaattacacgcttttggataaaatgttatgggaaaaaatgggatat |
4546347 |
T |
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| Q |
111 |
attnnnnnnntcatctgaattaaagaccaatgatctaattcttttatatcattatacctttaattaataaataatatgttttcgggcatgacctaataaa |
210 |
Q |
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| T |
4546346 |
a-----aaaatcatctgaattatagaccaatgatataattcttttatatcattataccttcaat----aaagaatatgttttccggcatgacctaggaaa |
4546256 |
T |
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| Q |
211 |
agaatgtatttagataagtttgatgttttcaacttttgaaattcttttgat |
261 |
Q |
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| T |
4546255 |
agggtgtttttaggtatgtttgatgttttcaacttttgaaattcttttgat |
4546205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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