View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10015_low_1 (Length: 336)
Name: NF10015_low_1
Description: NF10015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10015_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 44060050 - 44059794
Alignment:
| Q |
8 |
aagcagagacgggttgactgcataattcatttataaccatgatatattatcccagatgaaaaagaaaacatattttatatcataaggccaacaagtttcc |
107 |
Q |
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| T |
44060050 |
aagcacagacgggttgactgcataattcatttataaccatgatatattatcccagatgaaaaagaaaacatattttatatcataaggccaacaagtttcc |
44059951 |
T |
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| Q |
108 |
taaccttcacctcaactgggactatcggtgtaaagtattagatgaactgtnnnnnnnnnnnnnnncagcacagtggaaagacattaaatcccatcctagc |
207 |
Q |
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| T |
44059950 |
taaccttcacctcaactgggactatcggtgtaaagtattagatgaactgt-----aaaaaaaaaacagcacagtggaaagacattaaatcccatcctagc |
44059856 |
T |
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| Q |
208 |
taataaaatcaatcacaaagtcttctttccaattcataggatcgattccaaaagatttcacc |
269 |
Q |
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| T |
44059855 |
taataaaatcaatcacaaagtcttctttccaattcataggatcgattccaaaagatttcacc |
44059794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 46837860 - 46837911
Alignment:
| Q |
217 |
caatcacaaagtcttctttccaattcataggatcgattccaaaagatttcac |
268 |
Q |
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| T |
46837860 |
caatcacaaagtcttcctaccatttcataggatcgattccaaaagatttcac |
46837911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 44059776 - 44059738
Alignment:
| Q |
283 |
tccaatggcacaagtaaaaataggtacgggtcttgtttt |
321 |
Q |
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| T |
44059776 |
tccaatggcacaagtaaaaataggtacgggtcttgtttt |
44059738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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