View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10016_1 (Length: 427)
Name: NF10016_1
Description: NF10016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10016_1 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 37704455 - 37704859
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704455 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
37704554 |
T |
|
| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704555 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacg |
37704654 |
T |
|
| Q |
201 |
aaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaa |
300 |
Q |
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| T |
37704655 |
aaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaa |
37704754 |
T |
|
| Q |
301 |
ataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37704755 |
ataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaa |
37704854 |
T |
|
| Q |
401 |
atcgg |
405 |
Q |
| |
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||||| |
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| T |
37704855 |
atcgg |
37704859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 37698974 - 37699349
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
98 |
Q |
| |
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|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
|
| Q |
99 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
197 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||| |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
|
| Q |
198 |
acgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatg |
294 |
Q |
| |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
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| T |
37699174 |
actaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatg |
37699273 |
T |
|
| Q |
295 |
aagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
364 |
Q |
| |
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|||||||| |||||||||||||||||| | ||||||||||||||||||||| || ||| |||||||||||| |
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| T |
37699274 |
aagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 37437521 - 37437823
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| | |
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| T |
37437521 |
ccaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaat |
37437619 |
T |
|
| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcac |
199 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |
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| T |
37437620 |
tggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc-- |
37437717 |
T |
|
| Q |
200 |
gaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaa |
296 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
37437718 |
--aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaa |
37437815 |
T |
|
| Q |
297 |
gaaaataa |
304 |
Q |
| |
|
|||||||| |
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|
| T |
37437816 |
gaaaataa |
37437823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 37698637 - 37698864
Alignment:
| Q |
1 |
ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | |||| |||||||||| | |
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|
| T |
37698637 |
ccaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaat |
37698719 |
T |
|
| Q |
101 |
tggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta---- |
195 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
37698720 |
tggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatta |
37698811 |
T |
|
| Q |
196 |
gcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
248 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37698812 |
gcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 128 - 364
Target Start/End: Complemental strand, 16841109 - 16840857
Alignment:
| Q |
128 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
226 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
227 |
g------ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaa |
310 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaa |
16840911 |
T |
|
| Q |
311 |
ttgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
364 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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|
| T |
16840910 |
atgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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