View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10017_high_2 (Length: 351)
Name: NF10017_high_2
Description: NF10017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10017_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 4031193 - 4031117
Alignment:
| Q |
19 |
atctttatctttatctttattattaacatttgcaaagatcctagcaatttcaagttgtgtattagcaataatttcag |
95 |
Q |
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| T |
4031193 |
atctttatctttatctttattattaacatttgcaaagatcctagcaatttcaagttgtgtattagcaataatttcag |
4031117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 4031036 - 4030979
Alignment:
| Q |
176 |
gtttgttctgatctcactaccacctctgctacccaccttatgctttctgctattccca |
233 |
Q |
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| T |
4031036 |
gtttgttctgatctcactaccacctctgctacccaccttatgctttctgctattccca |
4030979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 4030911 - 4030876
Alignment:
| Q |
301 |
ctcgtctttttcgctgtaaagcgccggcgtgctact |
336 |
Q |
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| T |
4030911 |
ctcgtctttttcgctgtaaagcgccggcgtgctact |
4030876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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