View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10017_low_1 (Length: 444)
Name: NF10017_low_1
Description: NF10017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10017_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 16471210 - 16471630
Alignment:
| Q |
22 |
acgtttaacagttgccttatagttgtttaaatctactagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatactcaccaatc |
121 |
Q |
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||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16471210 |
acgtttaacagttgctttatagttgttcaaatctataagtttagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatc |
16471309 |
T |
|
| Q |
122 |
tgttgatctaggtcaccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
221 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16471310 |
tgttgatctaggtctccaacatatactccattgatcttgtttaatacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
16471409 |
T |
|
| Q |
222 |
agcaaaatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcataaaacaatcctaagttgccaaaatgataaagacagttagctgaa |
321 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16471410 |
agcataatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcataaaacaattctaagttgccaaaatgataaagacagttagctgaa |
16471509 |
T |
|
| Q |
322 |
cgagaggttgacaccacactaggtatatgagtcatctcccttataaagtgttcaacattcagtttt---------tctcaatcaaccataagttttctat |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
16471510 |
tgagaggttgacaccacactaggtatatgagtcatgtcccttataaagtgttcaacattcagttttctatctccccctcaatcaaccagaagttttctat |
16471609 |
T |
|
| Q |
413 |
cccgttgtactttgtacctttg |
434 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
16471610 |
cccgttgtac-ttgtacctttg |
16471630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 16464188 - 16464504
Alignment:
| Q |
22 |
acgtttaacagttgccttatagttgtttaaatctactagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatactcaccaatc |
121 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16464188 |
acgtttaacagttgcattatagttgttcaaatctacaagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatc |
16464287 |
T |
|
| Q |
122 |
tgttgatctaggtcaccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
221 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16464288 |
tgttgatctaggtctccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
16464387 |
T |
|
| Q |
222 |
agcaaaatacaacacatgtaaagatctcaaatttcacaacggaacaaaccaatcataaaacaatcctaagttgccaaaatgataaagacagttagctgaa |
321 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
16464388 |
agaaaaatacagcacatgtaaagatctcaaatttcacaacggaataaaccaatcat-aaacaattctaagttgccaaaatgat--agacagttagctgaa |
16464484 |
T |
|
| Q |
322 |
cgagaggttgacaccacact |
341 |
Q |
| |
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||||||||||||||||||| |
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| T |
16464485 |
tgagaggttgacaccacact |
16464504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 16493747 - 16493879
Alignment:
| Q |
87 |
attggagcttcgcaagttcctcatactcaccaatctgttgatctaggtcaccaacatatactccattgatcttgtttagtacatccacagcaatttcctc |
186 |
Q |
| |
|
|||| ||||| |||||||||||||||| | |||| || ||||||||||||||||||||||||| ||||||||||||||| || |||| ||| |||||||| |
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| T |
16493747 |
attgtagctttgcaagttcctcatacttagcaatttggtgatctaggtcaccaacatatactcgattgatcttgtttagaacgtccatagcgatttcctc |
16493846 |
T |
|
| Q |
187 |
aaccaatgccaattctgttctgtacacaaacat |
219 |
Q |
| |
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||| ||| ||| |||||| |||| | ||||||| |
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| T |
16493847 |
aactaattccagttctgtcctgttctcaaacat |
16493879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 16499126 - 16499188
Alignment:
| Q |
87 |
attggagcttcgcaagttcctcatactcaccaatctgttgatctaggtcaccaacatatactc |
149 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| | |||||||| |||||||||||| |||| |
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| T |
16499126 |
attgtagcttcgcaagttcctcatactttgcaattttttgatctaagtcaccaacataaactc |
16499188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 44950209 - 44950366
Alignment:
| Q |
103 |
ttcctcatactcaccaatctgttgatctaggtcaccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattct |
202 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
44950209 |
ttcctaatacttaccaatctgttgatctaggtcaccaacatatacttgattgatcttgtttagcacatccatagcaatttcctcaactaatgccaattct |
44950308 |
T |
|
| Q |
203 |
gttctgtacacaaacatcaagcaaaatacaacacatgtaaagatctcaaatttcacaa |
260 |
Q |
| |
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||||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||| |
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|
| T |
44950309 |
gttctgtacacaaacattaagaaaaatacagcacatgtaaagatctcaaattttacaa |
44950366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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