View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10018_high_10 (Length: 227)
Name: NF10018_high_10
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10018_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4900746 - 4900965
Alignment:
| Q |
1 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
100 |
Q |
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| T |
4900746 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
4900845 |
T |
|
| Q |
101 |
agtgttaattatgagtgtaatattcacttgatcataagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900846 |
agtgttaattattagtgtaatattcacttgatcatgagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
4900945 |
T |
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| Q |
201 |
ttattaggccatcttctctg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
4900946 |
ttattaggccatcttctctg |
4900965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4948144 - 4948363
Alignment:
| Q |
1 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948144 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
4948243 |
T |
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| Q |
101 |
agtgttaattatgagtgtaatattcacttgatcataagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948244 |
agtgttaattattagtgtaatattcacttgatcatgagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
4948343 |
T |
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| Q |
201 |
ttattaggccatcttctctg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
4948344 |
ttattaggccatcttctctg |
4948363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5009917 - 5010136
Alignment:
| Q |
1 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5009917 |
gacacaatcagatagtgctttgttttgtgctactgtgaagcagccaataagtgttggtatagatggctccacattggattttcaactatacactggtgta |
5010016 |
T |
|
| Q |
101 |
agtgttaattatgagtgtaatattcacttgatcataagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5010017 |
agtgttaattattagtgtaatattcacttgatcatgagttcgaatactgattggaacaattcttaatcaaattttattaacatctcacacgaacttcaga |
5010116 |
T |
|
| Q |
201 |
ttattaggccatcttctctg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5010117 |
ttattaggccatcttctctg |
5010136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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