View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10018_high_4 (Length: 348)
Name: NF10018_high_4
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10018_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 411845 - 411508
Alignment:
| Q |
1 |
ttatgaatcatctatttaaagcttgagaaacacaaactcctcgatagcaggcacagctccaatattctcaagagcttccttatttggctcttcatcgacg |
100 |
Q |
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| T |
411845 |
ttatgaatcatctatttaaagcttgagaaacacaaactcctcaatagcaggcacagctccaatattctcaagagcttccttatttggctcttcatcgacg |
411746 |
T |
|
| Q |
101 |
ccaatagccataagcgctttcttcctacgcgatgttcttccaacgctcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaa |
200 |
Q |
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| T |
411745 |
ccaatagccataagcgctttcttcctacgcgatgttcttccaacactcataaagctcacattcacatttttctcgcctaatatgtttccgacagtaccaa |
411646 |
T |
|
| Q |
201 |
tcatcccaggttgatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411645 |
tcatcccaggttgatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatcccacacatgtaaggtgtggtgtaccgta |
411546 |
T |
|
| Q |
301 |
cttcacttttccatcaatgcttatctgaccagtctctg |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
411545 |
cttcacttttccatcaatgcttatctgaccagtctctg |
411508 |
T |
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