View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10018_high_8 (Length: 241)
Name: NF10018_high_8
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10018_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 2485654 - 2485765
Alignment:
| Q |
112 |
aagagagagacacgtaagaatgcatgcatgagtcagcactagtctccatcctttaaacttgaataagagaagaaaataaagaccgcaccagaaatagcgg |
211 |
Q |
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| T |
2485654 |
aagagagagacacgtaagaatgcatgcatgagtcagcactagtctccatcatttaaacttgaataagagaagaaaataaagaccgcaccagaaatagcgg |
2485753 |
T |
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| Q |
212 |
gaactctcataa |
223 |
Q |
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|||||||||||| |
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| T |
2485754 |
gaactctcataa |
2485765 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2485543 - 2485601
Alignment:
| Q |
1 |
tttttgaaaaagaaaacggcgtgcattttgaaaattttcttatccacttgagttatggg |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2485543 |
tttttgaaaaagaaaacggcgtgcattttgaaaattttcttatccacttgagttatggg |
2485601 |
T |
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