View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10018_low_3 (Length: 448)
Name: NF10018_low_3
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10018_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 4 - 433
Target Start/End: Complemental strand, 43315535 - 43315107
Alignment:
| Q |
4 |
ggagaagcagagatcagggaaggatgataatcacattgaccatcagattagtgctccagcttttgatgatgcttggtacaaatcctatgttgctgaaaaa |
103 |
Q |
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||||||| | |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43315535 |
ggagaagaaaagatcagggaagaatgataatcacattgaccatcagactagtgctccagcttttgatgatgcttggtacaaatcctatgttgctgaaaaa |
43315436 |
T |
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| Q |
104 |
cagaaacagaatgagcataacaaaaatgcaatttttgtgaggtcattaagccatggcagtggcagaaagtcattgttatttggaagcaaggagatgttgg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43315435 |
cagaaacagaatgagcataacaaaaatgcaatttttgtgaggtcattaagccatggcagtggcagaaagtcattgttatttggaagcaaagagatgttgg |
43315336 |
T |
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| Q |
204 |
ctgctgtgaagattcaaacttttttcagaggctatttggtatgtgaatatcaccaacttttgtattctaggaaagtttatgttaaattgttttaggaatg |
303 |
Q |
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| T |
43315335 |
ctgctgtgaagattcaaacttttttcagaggctatttggtatgtgaatgtcaccaacttttgtattctaggaaagtttatgttaaattgttttaggaatg |
43315236 |
T |
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| Q |
304 |
tttttatttgctcatatgtgagtctctttccacaaattaatgtcattttctgaatttgattgttttgtaaatggtaatgcttctagctttgtctacgtga |
403 |
Q |
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| T |
43315235 |
tttttatttgctcatatgt-tgtctctttccacaaattaatgtcattttctgaatttgattgttttgtaaatggtaatgcttctagctttgtctacgtga |
43315137 |
T |
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| Q |
404 |
cacatacttttttgattgttattgattctt |
433 |
Q |
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| T |
43315136 |
cacatacttttttgattgttattgattctt |
43315107 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 4609107 - 4609152
Alignment:
| Q |
202 |
ggctgctgtgaagattcaaacttttttcagaggctatttggtatgt |
247 |
Q |
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| T |
4609107 |
ggctgctgtaaagattcaaactttcttcagaggctatttggtatgt |
4609152 |
T |
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