View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10018_low_6 (Length: 354)
Name: NF10018_low_6
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10018_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 25 - 346
Target Start/End: Original strand, 43976538 - 43976868
Alignment:
| Q |
25 |
tccacccaacaccctccaacgcaagattaacc-gagtcgaaatacggtcttgatggagagtccaagagaa--------ccttcaagggagctggactctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
43976538 |
tccacccaacaccctccaacgcaagattaacccgagtcgaaatacggtcttgaaggagagtccaagagaacgccagaaccttcaagggagccgaactctt |
43976637 |
T |
|
| Q |
116 |
ccaaatataattgaacacccttttatccccttctccaatcaccatctcattcactctcaacctttcaagtaaagagtaacaagactttaccgaaaaacaa |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43976638 |
ccaaatatcattgaacacccttttatccccttctccaatcaccatctcattcactcgcaacctttcaagtaaagagtaacaagactttaccgataaacaa |
43976737 |
T |
|
| Q |
216 |
gcttccacacccaagaatcacaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43976738 |
gcttccacacccaagaatcacaatccccaatcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacg |
43976837 |
T |
|
| Q |
316 |
cctccacaacaaactccactctccaacacca |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43976838 |
cctccacaacaaactccactctccaacacca |
43976868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 336
Target Start/End: Original strand, 18021965 - 18022255
Alignment:
| Q |
65 |
atacggtcttgatggagagtccaagagaa--------ccttcaagggagctggactcttccaaatataattgaacacccttttatccccttctccaatca |
156 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
18021965 |
atacggtcttgaaggagagtccaagagaaagccaaaaccttcaacggagccgggctcttccaaatataatttaacaccctttt-tccccttctccgatca |
18022063 |
T |
|
| Q |
157 |
ccatctcattcactctcaacctttcaagtaaagagtaacaagactttaccgaaaaacaa------------gcttccacacccaagaatcacaatcccca |
244 |
Q |
| |
|
||| | ||| | |||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||| |||||||||| ||| |
|
|
| T |
18022064 |
acatgccggtcatttccaacctttcaagtaaagaataacatgactttaccgaaaaacaaccccgtcatcaagcttccacgcccaaaaatcacaatctcca |
18022163 |
T |
|
| Q |
245 |
atcacttcaaaagcgcctaaacaaagtaacaaatcattcacgagacctatttcccacacaaacaagttacgcctccacaacaaactccactc |
336 |
Q |
| |
|
||| | |||||| | |||| | || |||||| ||||| || | |||| |||||| |||||||| | |||| ||||||| || |||||||| |
|
|
| T |
18022164 |
atcccctcaaaaacacctataaaagttaacaagtcattgacaaagcctacttcccatacaaacaaatgacgcatccacaagaatctccactc |
18022255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University