View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10018_low_8 (Length: 343)

Name: NF10018_low_8
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10018_low_8
NF10018_low_8
[»] chr7 (6 HSPs)
chr7 (213-319)||(32390810-32390917)
chr7 (213-300)||(32390054-32390141)
chr7 (217-306)||(24240689-24240778)
chr7 (92-135)||(23256475-23256518)
chr7 (92-135)||(32390221-32390264)
chr7 (92-135)||(32390688-32390731)
[»] scaffold0169 (2 HSPs)
scaffold0169 (213-306)||(26806-26898)
scaffold0169 (267-324)||(27376-27434)
[»] chr3 (2 HSPs)
chr3 (225-298)||(50382671-50382744)
chr3 (227-306)||(50381975-50382054)
[»] chr8 (1 HSPs)
chr8 (225-301)||(21190170-21190246)
[»] chr4 (2 HSPs)
chr4 (213-319)||(11147854-11147959)
chr4 (92-135)||(11148037-11148080)
[»] chr2 (2 HSPs)
chr2 (213-293)||(45114810-45114890)
chr2 (92-135)||(45114667-45114710)
[»] scaffold0020 (1 HSPs)
scaffold0020 (213-319)||(2056-2163)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 32390810 - 32390917
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagc-aac 311  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||| | |||    
T  32390810 tcatttacccccctatgacgtggcataaaattcaaccaatgtggaggtgccacgtgtacatttacttgccacgtcatatggtttaacagtcaaaacaaac 32390909  T
Q  312 ggaggggg 319  Q
    ||||||||    
T  32390910 ggaggggg 32390917  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 32390141 - 32390054
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaaca 300  Q
    ||||||||||| ||||||||| |||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||    
T  32390141 tcatttacccctctatgacgtagcataaaattcagctaatgtagaggtgtcacgtgtacatttacttgccacgtcatatggtttaaca 32390054  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 24240778 - 24240689
Alignment:
Q  217 ttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaa 306  Q
    ||||||| ||||||||||||||||  ||||| | || |||||||| || ||||||| ||| ||||||||||| | ||| |||||| ||||    
T  24240778 ttaccccgctatgacgtggcataactttcagtccacatggaggtgccacgtgtacagttaattgccacgtcacagggtgtaacagccaaa 24240689  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 23256518 - 23256475
Alignment:
Q  92 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 135  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  23256518 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 23256475  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 32390264 - 32390221
Alignment:
Q  92 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 135  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390264 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390221  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 32390688 - 32390731
Alignment:
Q  92 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 135  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  32390688 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 32390731  T

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Target: scaffold0169 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 26898 - 26806
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaa 306  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||| ||||||| ||||    
T  26898 tcatttacccc-ctatgacatggcataaaattcagccaatgtggaggtgtcacatgtacatttacttgccacatcatatggattaacagccaaa 26806  T

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Target: scaffold0169; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 27376 - 27434
Alignment:
Q  267 tgtacatttacttgccacgtcatatggtttaacagacaaagc-aacggagggggtaatt 324  Q
    ||||||||||| |||||| |||||||||||||||| |||| | ||||||||||||||||    
T  27376 tgtacatttacatgccacatcatatggtttaacagccaaaacaaacggagggggtaatt 27434  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 50382671 - 50382744
Alignment:
Q  225 ctatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaa 298  Q
    |||||| |||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||    
T  50382671 ctatgatgtggcataaaattcagccaatgtggaggtgccacgtgtacatttacttaccacgtcatatggtttaa 50382744  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 50382054 - 50381975
Alignment:
Q  227 atgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaa 306  Q
    |||||||| |||||||||||||||| ||||||||| ||  |||||||||| |||||||||||||||||||||||| ||||    
T  50382054 atgacgtgacataaaattcagccaatgtggaggtgccacatgtacatttatttgccacgtcatatggtttaacagccaaa 50381975  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 21190246 - 21190170
Alignment:
Q  225 ctatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacag 301  Q
    ||||||||||||||||||||||||||| ||||||||| ||  || |||||||||  |||||||||||||||||||||    
T  21190246 ctatgacgtggcataaaattcagccaatgtggaggtgccacatgcacatttactcaccacgtcatatggtttaacag 21190170  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 11147959 - 11147854
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagc-aac 311  Q
    ||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||  ||||||||||||||||| ||| ||||||||||||| |||| | |||    
T  11147959 tcatttacccc-ctatgacgtgacataaaattcaaccaatgtggaggtgccacatgtacatttacttgccatgtc-tatggtttaacagccaaaacaaac 11147862  T
Q  312 ggaggggg 319  Q
    ||||||||    
T  11147861 ggaggggg 11147854  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 11148080 - 11148037
Alignment:
Q  92 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 135  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  11148080 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 11148037  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 45114810 - 45114890
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatgg 293  Q
    ||||||||||| |||| ||||||| |||||| |||||||  ||||||||  ||||||||||||||||| ||||||||||||    
T  45114810 tcatttacccccctataacgtggcgtaaaatccagccaatatggaggtgctatgtgtacatttacttgtcacgtcatatgg 45114890  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 45114667 - 45114710
Alignment:
Q  92 ttgttgatagggtgttgtttcttaaaacaatttctgtatttttt 135  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  45114667 ttgttgataggttgttgtttcttaaaacaaattctgcatttttt 45114710  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 2163 - 2056
Alignment:
Q  213 tcatttaccccactatgacgtggcataaaattcagccaacgtggaggtgtcatgtgtacatttacttgccacgtcatatggtttaacagacaaagca-ac 311  Q
    ||||||||| | ||||||||||||||||  ||||| | ||||||||||| || |||| || |||  |||||||||| | ||| |||||| |||| || ||    
T  2163 tcatttacctccctatgacgtggcataactttcagtccacgtggaggtgccacgtgtgcagttaactgccacgtcacagggtgtaacagccaaaacagac 2064  T
Q  312 ggaggggg 319  Q
    ||||||||    
T  2063 ggaggggg 2056  T

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