View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10018_low_9 (Length: 292)

Name: NF10018_low_9
Description: NF10018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10018_low_9
NF10018_low_9
[»] chr1 (2 HSPs)
chr1 (11-139)||(6496072-6496200)
chr1 (159-276)||(6495931-6496048)
[»] chr6 (2 HSPs)
chr6 (159-230)||(5885892-5885963)
chr6 (159-230)||(6944806-6944879)
[»] chr5 (5 HSPs)
chr5 (159-230)||(30421407-30421478)
chr5 (160-229)||(5007923-5007993)
chr5 (184-230)||(8879371-8879417)
chr5 (186-231)||(5738470-5738514)
chr5 (160-225)||(9999305-9999370)
[»] chr7 (2 HSPs)
chr7 (160-230)||(29450464-29450533)
chr7 (159-227)||(48534869-48534938)
[»] chr3 (3 HSPs)
chr3 (165-230)||(50191745-50191810)
chr3 (159-230)||(30367104-30367175)
chr3 (161-230)||(46173868-46173937)
[»] chr4 (3 HSPs)
chr4 (160-227)||(19480630-19480697)
chr4 (160-230)||(53562753-53562822)
chr4 (186-230)||(37339021-37339064)
[»] chr2 (6 HSPs)
chr2 (163-230)||(29299268-29299334)
chr2 (160-226)||(19057296-19057363)
chr2 (191-230)||(36943524-36943563)
chr2 (160-230)||(39770312-39770382)
chr2 (160-229)||(17642885-17642954)
chr2 (167-228)||(27713498-27713559)
[»] chr8 (2 HSPs)
chr8 (160-230)||(4904291-4904360)
chr8 (159-224)||(4295324-4295390)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 6496200 - 6496072
Alignment:
Q  11 cacagaaccccactttttaagagaggcattaatatagttcctttgtgtcctagatgccataatcatgtggaaaagtactactcatgcttgattgccgctg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6496200 cacagaaccccactttttaagagaggcattaatatagttcctttgtgtcctagatgccataatcatgtggaaaagtactactcttgcttgattgccgctg 6496101  T
Q  111 agttattcaaatttggtttggattaagtc 139  Q
    ||||||||||||||||||||||| |||||    
T  6496100 agttattcaaatttggtttggatcaagtc 6496072  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 6496048 - 6495931
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaagcaaaacagaccgcagcacactactaca 258  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6496048 gaatcagcaaatattattaggctcagctagcacaagatgcacttaactggcaaaggagaaaaaagagtacaagcaaaacagaccgcagcacactactaca 6495949  T
Q  259 aacaaactcgatcaaaaa 276  Q
    |||||||||||| |||||    
T  6495948 aacaaactcgataaaaaa 6495931  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 5885963 - 5885892
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||||| ||||||||  ||||||| |||||||||||||||||| | ||||||||||||||||||    
T  5885963 gaatcagcaaatataattaggctcggctagcataagatgcacttaaccggctatggaggaaaaagagtacaa 5885892  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 6944806 - 6944879
Alignment:
Q  159 gaatcagcaaa-tattattaggcttagctagcacaagatgcacttaaccggcaaa-ggaggaaaaagagtacaa 230  Q
    ||||||||||| |||||||||||| || |||||||||| ||||  |||||||||| || |||||||||||||||    
T  6944806 gaatcagcaaaatattattaggctcagttagcacaagacgcacaaaaccggcaaaggggggaaaaagagtacaa 6944879  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 30421407 - 30421478
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    ||||||||||   ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  30421407 gaatcagcaacatttattaggctcggctagcacaagatgcacttaaccggcgaaggaggaaaaagagtacaa 30421478  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 5007923 - 5007993
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggc-aaaggaggaaaaagagtaca 229  Q
    |||||||||||||||||| ||   |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  5007923 aatcagcaaatattattaagcacggctagcacaagatgcaattaaccggcaaaaggaggaaaaagagtaca 5007993  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 8879417 - 8879371
Alignment:
Q  184 gctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8879417 gctagcacaaggtgcacttaaccggcaaaggaggaaaaagagtacaa 8879371  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 5738514 - 5738470
Alignment:
Q  186 tagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaag 231  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  5738514 tagcacaagatgcacttaacccgc-aaggaggaaaaagagtacaag 5738470  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 9999305 - 9999370
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagag 225  Q
    |||| ||||||||||||| |||  ||||||||||| |||||| |||| ||| ||||||||||||||    
T  9999305 aatcggcaaatattattaagctaggctagcacaaggtgcactaaacccgcataggaggaaaaagag 9999370  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 29450464 - 29450533
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||||||||||||   |||||||||||  |||||| |||||| ||||||||||||||||||||    
T  29450464 aatcagcaaatattattaggcacggctagcacaaggagcacttgaccggc-aaggaggaaaaagagtacaa 29450533  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 48534938 - 48534869
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccggc-aaaggaggaaaaagagta 227  Q
    ||||| ||||| ||||||| |||  |||||||||| |||||||||||| || ||||||||||||||||||    
T  48534938 gaatcggcaaaaattattaagctaggctagcacaatatgcacttaacccgcaaaaggaggaaaaagagta 48534869  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 50191745 - 50191810
Alignment:
Q  165 gcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||||  ||  ||||||||||||||||||  ||| |||||||||||||||||||||||    
T  50191745 gcaaatattattaaactaggctagcacaagatgcactatacccgcaaaggaggaaaaagagtacaa 50191810  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 30367175 - 30367104
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||| |||||| |||  ||||||||||||||||||  ||| || |||||| |||||||||||||    
T  30367175 gaatcagcaaattttattaagctaggctagcacaagatgcactatacccgcgaaggagaaaaaagagtacaa 30367104  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 46173937 - 46173868
Alignment:
Q  161 atcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    ||||||||||||||||| ||   | ||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  46173937 atcagcaaatattattacgcacggttagcataaggtgcacttcaccgacaaaggaggaaaaagagtacaa 46173868  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 19480697 - 19480630
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagta 227  Q
    |||||||||||||||||| ||  |||||||| ||| ||||||||||| ||| ||||| ||||||||||    
T  19480697 aatcagcaaatattattaagcagagctagcataaggtgcacttaacccgcataggagaaaaaagagta 19480630  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 53562822 - 53562753
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||||||||||||   | |||||||||||||||  |||| || | ||||||||||||||||||    
T  53562822 aatcagcaaatattattaggcacggatagcacaagatgcaccaaacctgc-acggaggaaaaagagtacaa 53562753  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 37339064 - 37339021
Alignment:
Q  186 tagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||||||||| || |||| ||||||||||||||||||    
T  37339064 tagcacaagatgcacttatcccgcaa-ggaggaaaaagagtacaa 37339021  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 29299334 - 29299268
Alignment:
Q  163 cagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    ||||||||||||||| |||  ||||||| | ||||||||||||| || ||||||||||||||||||||    
T  29299334 cagcaaatattattaagctaggctagcataggatgcacttaacccgc-aaggaggaaaaagagtacaa 29299268  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 19057296 - 19057363
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaac-cggcaaaggaggaaaaagagt 226  Q
    |||||||||||||||||| || ||| |||||||||||||||  ||| ||  |||||||||||||||||    
T  19057296 aatcagcaaatattattacgcatagatagcacaagatgcaccaaactcgcaaaaggaggaaaaagagt 19057363  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 36943524 - 36943563
Alignment:
Q  191 caagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  36943524 caaggtgcacttaacccgcaaaggaggaaaaagagtacaa 36943563  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 39770382 - 39770312
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    ||||||||||| ||||||  ||  | ||| ||||||||||||  ||| |||||||||||||||||||||||    
T  39770382 aatcagcaaattttattaaactaggttagtacaagatgcactatacccgcaaaggaggaaaaagagtacaa 39770312  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 17642885 - 17642954
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtaca 229  Q
    ||||||||||||||||||  || || ||||| |||| || || |||  ||||||||||||||||||||||    
T  17642885 aatcagcaaatattattaaactaagttagcataagaagcgctaaactcgcaaaggaggaaaaagagtaca 17642954  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 27713498 - 27713559
Alignment:
Q  167 aaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtac 228  Q
    ||||||||||| ||   |||||||||||  ||||| ||||||| ||||||||||||||||||    
T  27713498 aaatattattaagcacggctagcacaaggagcactaaaccggcgaaggaggaaaaagagtac 27713559  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 4904360 - 4904291
Alignment:
Q  160 aatcagcaaatattattaggcttagctagcacaagatgcacttaaccggcaaaggaggaaaaagagtacaa 230  Q
    |||||||||||| ||||||||   |||||||||||  |||||| |||||| ||||||||||||||||||||    
T  4904360 aatcagcaaataatattaggcacggctagcacaaggagcacttgaccggc-aaggaggaaaaagagtacaa 4904291  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 4295324 - 4295390
Alignment:
Q  159 gaatcagcaaatattattaggcttagctagcacaagatgcacttaaccgg-caaaggaggaaaaaga 224  Q
    ||||| ||||||||||||| ||   |||||| ||||||||||||||||||  |||||||||||||||    
T  4295324 gaatcggcaaatattattaagcaaggctagcccaagatgcacttaaccggtaaaaggaggaaaaaga 4295390  T

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