View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_high_2 (Length: 483)
Name: NF10019_high_2
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 50749645 - 50750100
Alignment:
| Q |
18 |
gttacaagttacaaaaatatcggaaaaagtttgaatcatgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaactgcattgttc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749645 |
gttacaagttacaaaaatatcagaaaaagtttgaatcatgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaactgcattgttc |
50749744 |
T |
|
| Q |
118 |
acagggagaagagtgatagcttctactggtgatcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgtgctggccggtatag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50749745 |
acagggagaagagtgatagcttctactggtgatcaagggaaagcatttacagttggccagctagtcatctattgtgtctttggtgtgctggccggtatag |
50749844 |
T |
|
| Q |
218 |
tcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaagtgagtttcaaactgcagtatataaa |
317 |
Q |
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| T |
50749845 |
tcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaagtgagtttcaaactgcagtatataaa |
50749944 |
T |
|
| Q |
318 |
tcatgtttctcttatcctgatcattaagtgattcctgattggatcgggtgtcatctgtgcaggtatcaagcgccacagccacttttgcaatgacattctc |
417 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50749945 |
tcatgcttctcttatcctgatcattaagtgattcctaattggatcgggtgtcatctgtgcaggtgtcaagcgccacagccacttttgcaatgacattctc |
50750044 |
T |
|
| Q |
418 |
ctcgtctatgtctgttgtcgaatactacttgctgaaacgatttccagttccctatg |
473 |
Q |
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| T |
50750045 |
ctcgtctatgtctgttgtggaatactacttgctgaaacgatttccagttccttatg |
50750100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 50813199 - 50812722
Alignment:
| Q |
18 |
gttacaagttacaaaaatatcggaaaaagtttgaatcatgtt---------acatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaa-- |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
50813199 |
gttacaagttacaaaaatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaag |
50813100 |
T |
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| Q |
107 |
---ctgcattgttcacagggagaagagtgatagcttctactggtgatcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgt |
203 |
Q |
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| T |
50813099 |
caactgcattgttcacacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgt |
50813000 |
T |
|
| Q |
204 |
gctggccggtatagtcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaa------gtgagt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||| |
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| T |
50812999 |
actggccggtatagtcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggggtcccttctcaatcaagtgagagt |
50812900 |
T |
|
| Q |
298 |
ttcaaactgcagtatataaatcatgtttctcttatcctgatcattaa-------------gtgattcctgattggatcgggtgtcatctgtgcaggtatc |
384 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||| || |||||||| |||||||||| |||| ||| ||||||| | |
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| T |
50812899 |
ttcaaactgcagtatataaatcgtcattctcttatcctgatcatcaaacagttggttagtatgattcctaattggatcggatgtcttctttgcaggtgcc |
50812800 |
T |
|
| Q |
385 |
aagcgccacagccacttttgcaatgacattctcctcgtctatgtctgttgtcgaatactacttgctgaaacgatttcc |
462 |
Q |
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| T |
50812799 |
aagcgccacgaccacttttgcaatgacattctcctcgtctatgtctgttgtagaatactatttgctgaaacgatttcc |
50812722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 50862665 - 50863142
Alignment:
| Q |
18 |
gttacaagttacaaaaatatcggaaaaagtttgaatcatgtt---------acatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaa-- |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
50862665 |
gttacaagttacaaaaatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaag |
50862764 |
T |
|
| Q |
107 |
---ctgcattgttcacagggagaagagtgatagcttctactggtgatcaagggaaagcatttacagttggccagctagttatctattgtgtctttggtgt |
203 |
Q |
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| T |
50862765 |
caactgcattgttcacacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgt |
50862864 |
T |
|
| Q |
204 |
gctggccggtatagtcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggagtccctcctcaa------gtgagt |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||| |
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| T |
50862865 |
actggccggtatagtcggtggattgctgggactaggaggcggatttgttatgggtccgctttttctagagctaggggtcccttctcaatcaagtgagagt |
50862964 |
T |
|
| Q |
298 |
ttcaaactgcagtatataaatcatgtttctcttatcctgatcattaa-------------gtgattcctgattggatcgggtgtcatctgtgcaggtatc |
384 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||| || |||||||| |||||||||| |||| ||| ||||||| | |
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| T |
50862965 |
ttcaaactgcagtatataaatcgtcattctcttatcctgatcatcaaacagttggttagtatgattcctaattggatcggatgtcttctttgcaggtgcc |
50863064 |
T |
|
| Q |
385 |
aagcgccacagccacttttgcaatgacattctcctcgtctatgtctgttgtcgaatactacttgctgaaacgatttcc |
462 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
50863065 |
aagcgccacgaccacttttgcaatgacattctcctcgtctatgtctgttgtagaatactatttgctgaaacgatttcc |
50863142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 36462922 - 36462838
Alignment:
| Q |
378 |
aggtatcaagcgccacagccacttttgcaatgacattctcctcgtctatgtctgttgtcgaatactacttgctgaaacgatttcc |
462 |
Q |
| |
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|||||||||| || ||| ||||||||||||||||||| || | ||||||||||| || ||||| ||| | |||||||| ||||| |
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| T |
36462922 |
aggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttcc |
36462838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 36472034 - 36471957
Alignment:
| Q |
396 |
ccacttttgcaatgacattctcctcgtctatgtctgttgtcgaatactacttgctgaaacgatttccagttccctatg |
473 |
Q |
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| T |
36472034 |
ccacttttgcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttccaattccatatg |
36471957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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