View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_high_3 (Length: 450)
Name: NF10019_high_3
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 36144477 - 36144887
Alignment:
| Q |
20 |
atacgtacaataatttgtagatagcatagcataagcagtacaggggaatacaacaactataggcaacatgttttgtgctttccaaaggaaccgacactag |
119 |
Q |
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| T |
36144477 |
atacgcacaataatttgtaggtagcatagcataagca---caggggaatacaac---tataggcaacatgttttgtgctttccaaaggaaccgacactag |
36144570 |
T |
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| Q |
120 |
gagggaagggtagaagaaggtggatggatagatggatggagtgaaccacttgtattattagcatagtacgcttgtagaagaaagtgttgagatcgggact |
219 |
Q |
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| T |
36144571 |
gagggaagggtagaagaaggtggatg--------gatggagtgaaccacttgtactattagcatagtacgcttgtagaagaaagtgttgagatcgggact |
36144662 |
T |
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| Q |
220 |
tgggagtgtccctattaacacgtgtgttttgtttaccggaaccttccacttctattact------gcatactgcatgcttaccaaatatatttaatttct |
313 |
Q |
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| T |
36144663 |
tgggagtgtccctattaacacgtgtgttttgtttaccggaaccttccacttctattactgcataagcatactgcatgcttacccaatatatttaatttct |
36144762 |
T |
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| Q |
314 |
ggtacacaatcctatgtatgtatgaatatgatagacaacatttttacagtttctttgtttggacc----ccctccagctccacattcattcactaccgtc |
409 |
Q |
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| T |
36144763 |
ggtacacaatcc----tatgtatgaatatgatagacagcatttttacagtttgtttgtttggaccccctccctccacctccacattcattcactaccgtc |
36144858 |
T |
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| Q |
410 |
atttttcctgctctattactctcctagtc |
438 |
Q |
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| T |
36144859 |
atttttcctgctctattactctcctagtc |
36144887 |
T |
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