View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_low_11 (Length: 253)
Name: NF10019_low_11
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 4680471 - 4680233
Alignment:
| Q |
14 |
caaaggatgtatggctcaagaataaaagttgattgtacaaatcaatacattagattacacaaaacttgtctattgttacaacaaaacaacccaccctgac |
113 |
Q |
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| T |
4680471 |
caaaggatgtatggctcaagaataaaagttgattgtacaaatcaatacattagattacacaaaacttgtctattgttacaacaaaacaacccaccctgac |
4680372 |
T |
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| Q |
114 |
gtttattgtccaaagagaaaataactgggacacacgactaatgatgagaccaaaattgaataatagttttgttcactatgnnnnnnnnnnnnnnnnnttt |
213 |
Q |
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| T |
4680371 |
gtttattgtccaaagagaaaataactgggacacacgactaatgatgagaccaaaattgaataatag-tttgttcactatgaaaaaagaagaaaaaaatgt |
4680273 |
T |
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| Q |
214 |
caaatatcttcctataataaatatattctttgactatata |
253 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
4680272 |
caaatatcttcctataatatatatattctttgactatata |
4680233 |
T |
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