View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_low_12 (Length: 250)
Name: NF10019_low_12
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39464294 - 39464058
Alignment:
| Q |
1 |
tcaactcagctggagcaactgactgaactgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtactacgcaaggaatccg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39464294 |
tcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccg |
39464195 |
T |
|
| Q |
101 |
agtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39464194 |
agtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
39464095 |
T |
|
| Q |
201 |
atctgatactattctagctggtttaccaatatatcct |
237 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
39464094 |
atctgatactattctagctggtttacggatatatcct |
39464058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 39472500 - 39472701
Alignment:
| Q |
35 |
tcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtactacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaa |
134 |
Q |
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|||||||||||||||||| ||||| |||||| | ||||||||||| || ||| |||| |||| ||||||||| | ||| ||||| ||||||||||| |
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| T |
39472500 |
tcccgagtttcgctaacttggttccaacaaaagcattgcccagtgctgtgctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaa |
39472599 |
T |
|
| Q |
135 |
gaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttaccaatatat |
234 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| || || |||||||||||| |||||| |
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| T |
39472600 |
gaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacctatatat |
39472699 |
T |
|
| Q |
235 |
cc |
236 |
Q |
| |
|
|| |
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|
| T |
39472700 |
cc |
39472701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 39457992 - 39457797
Alignment:
| Q |
41 |
gtttcgctaactccgttcctacaaaatcgttgcccagtgcagtactacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggc |
140 |
Q |
| |
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||||||||||||| |||||| |||| | ||||||||| |||| ||||||||||||| ||||| || |||||||||||||| ||||| |||||||| || |
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| T |
39457992 |
gtttcgctaactcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgc |
39457893 |
T |
|
| Q |
141 |
tgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttaccaatatatcc |
236 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |||| ||||| || ||| | ||| || || |||||| |||||||| |||||||| |
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| T |
39457892 |
tgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacccatatatcc |
39457797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 39475976 - 39476141
Alignment:
| Q |
35 |
tcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtactacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaa |
134 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||| ||||||||| || |||| |||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
39475976 |
tcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgcaagaggcctcaa |
39476075 |
T |
|
| Q |
135 |
gaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
|
||| | |||| |||||||||| |||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
39476076 |
gaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactctttttt |
39476141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 39460809 - 39460882
Alignment:
| Q |
127 |
ggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39460809 |
ggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcattttt |
39460882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 39470430 - 39470297
Alignment:
| Q |
67 |
tcgttgcccagtgcagtactacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttg |
166 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| | | || | |||||||||| || |||||||||||||| || ||||| |||| || |||||||||| |
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| T |
39470430 |
tcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttcgccaaaggcctcaagaatgccgatggcattattgtcaattcatttg |
39470331 |
T |
|
| Q |
167 |
aagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
|
|||||||||||||| |||| ||||| || ||||| |
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| T |
39470330 |
aagagctagaatcctatgcggttcactccttttt |
39470297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 39455169 - 39455262
Alignment:
| Q |
107 |
ttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| || ||||| | |||||||||||||||||||| || ||||| ||||| ||||| || ||||| |
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| T |
39455169 |
ttttcaagagctatgcaagaggcctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactccttttt |
39455262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 39451539 - 39451635
Alignment:
| Q |
104 |
cgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
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||||||||||||||| | ||||||||||||| || ||||| ||||||||||||||||||||||||||||||| || || ||||| || ||||| |
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| T |
39451539 |
cgtttttcatgagcttcatagaaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactccttttt |
39451635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 39483798 - 39483892
Alignment:
| Q |
106 |
tttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | |||| ||||||||||||||||| ||||||||||||| || || ||||| || ||||| |
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|
| T |
39483798 |
tttttcatgagccttgcaagaggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactctttttt |
39483892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 39487049 - 39487100
Alignment:
| Q |
149 |
ttatagtaaattcatttgaagagctagaatcccatgcagttcattcattttt |
200 |
Q |
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||||||||||||||||||||||| ||||||| ||||| ||||| || ||||| |
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|
| T |
39487049 |
ttatagtaaattcatttgaagagttagaatcacatgctgttcaatccttttt |
39487100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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