View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_low_13 (Length: 242)
Name: NF10019_low_13
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 10426677 - 10426828
Alignment:
| Q |
72 |
agcaagccctgtaaattctagataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttga |
171 |
Q |
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| T |
10426677 |
agcaagctctgtaaattctagataagaccttg-aggcatgtgtatcattcaaattgatcaattccaatgtgctgaaataataaatatacaatggtgttga |
10426775 |
T |
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| Q |
172 |
taggatttggaaatatgcatcagataagtcttcagccgcacataggagaagct |
224 |
Q |
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| T |
10426776 |
taggatttggaaatatgcatcagataagtcttcagccgcgcaaaggagaagct |
10426828 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10426296 - 10426336
Alignment:
| Q |
1 |
aatgtggagaaccgagatactacgatgaagcgttgaattaa |
41 |
Q |
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| T |
10426296 |
aatgtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 4410938 - 4410830
Alignment:
| Q |
93 |
ataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgcatc |
192 |
Q |
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| T |
4410938 |
ataagaccttggaggcatgtgtaccattcacattgatcaattccaatgtgctgaattaattaatatacaatggtgctgataggatttgaaaatatgcatc |
4410839 |
T |
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| Q |
193 |
agataagtc |
201 |
Q |
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| T |
4410838 |
agatcagtc |
4410830 |
T |
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