View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10019_low_2 (Length: 859)
Name: NF10019_low_2
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 351 - 846
Target Start/End: Original strand, 23621892 - 23622387
Alignment:
| Q |
351 |
aggtattttagtgtatgacttacttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaattt |
450 |
Q |
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| T |
23621892 |
aggtattttagtgtctgacttacttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaattt |
23621991 |
T |
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| Q |
451 |
caccactaccggtctgaaaattgagatgttacaatattactacatccgtcccttatatttggtccttttagctttttatgtttatgtccaatctttggtt |
550 |
Q |
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| T |
23621992 |
caccactaccgctctgaaaattgagatgttacaatattgctacatccgtcccttatatttggtccttttagctttttatgtttatctccaaactttggtt |
23622091 |
T |
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| Q |
551 |
ctcttaagaaaccaatattcgattaattatgcttttccttttgtacgttacaaaaataaaaagcatacattaatattgtaacattagtagtattttgatt |
650 |
Q |
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| T |
23622092 |
ctcttaagaaaccaatattcgattaattatgcttttccttttgtacgttacaaaaataaaaagcatacattaatattgtaacattagtagtattttgatt |
23622191 |
T |
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| Q |
651 |
gtcaagcttagattgcagcgtagtaaaaataacttattccattacagttggaactaactgagtgactgttaaccctaattaactaactgttaaccgtgaa |
750 |
Q |
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| T |
23622192 |
gtcaagcttagattgcagcgtagtaaaaataacttattccattacagttggaactaactgagtgactgttaaccctaattaactaactgttaaccgtgaa |
23622291 |
T |
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| Q |
751 |
cgtcattaagaatctatgtgactcgaaacgataatctgttaatcaatacacaattgtgtgcttgcaggttttgtagaagtcttttttcttcttttt |
846 |
Q |
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| T |
23622292 |
cgtcattaagaatctatgtgactcgaaacgataatctgttaatcaatacacaattgcgtgcttgcaagttttgtagaagtcttttttcttcttttt |
23622387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 374 - 502
Target Start/End: Original strand, 23617913 - 23618041
Alignment:
| Q |
374 |
ttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaatttcaccactaccggtctgaaaattg |
473 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| |||||||||||||| | ||||||||||| |||||||||||| |||| || |||| ||| |
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| T |
23617913 |
ttgcattatacagatttttgtaaaggcgattaagagtaatggttttcaaattatttcaaatttagagtttaaaatttcaccaccaccgctccgaaagttg |
23618012 |
T |
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| Q |
474 |
agatgttacaatattactacatccgtccc |
502 |
Q |
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| T |
23618013 |
agatgttacaatatttctacatccgtccc |
23618041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 473 - 568
Target Start/End: Original strand, 23618043 - 23618138
Alignment:
| Q |
473 |
gagatgttacaatattactacatccgtcccttatatttggtccttttagctttttatgtttatgtccaatctttggttctcttaagaaaccaatat |
568 |
Q |
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| T |
23618043 |
gagatgttacaatatttctacatccatccctaatttttggtccttttagccttttatttttatccctaaactttggttattttaagaaaccaatat |
23618138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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