View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10019_low_5 (Length: 442)
Name: NF10019_low_5
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10019_low_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 4529889 - 4529535
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4529889 |
aaaagtgtcagtgtttgaagattaacc-aactgtactaacccttgtggcatacatctcaatctctcacaaccattcaactcaagatgcctaagacttttg |
4529791 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
4529790 |
ttgagattttctggtaatatttcgagctcagaacaatcagaaagttttagagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagta |
4529691 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||| |
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| T |
4529690 |
caatactctttgatagatcaatatatctcagatgcttcatctcttcaatactatttgggattgccagaatattcaatccacaaagtgtcaacacacgtaa |
4529591 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaagagcatttgaccgatgcagataattgcttgcat |
372 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||| || |||||||||||||||||| |
|
|
| T |
4529590 |
gaactttaagcctgaaaaggaaagaacgtttgactgacgcagataattgcttgcat |
4529535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 4398001 - 4398355
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || |
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|
| T |
4398001 |
aaaagtgttagtgtttgaagatcagtc-aactgtcctagcccccgtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttcta |
4398099 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
4398100 |
ttgagattttctggcaatatttcaagcttagaacaatcagcaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagta |
4398199 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|| | || |||||||||||||||||| | ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
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|
| T |
4398200 |
cattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaa |
4398299 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaagagcatttgaccgatgcagataattgcttgcat |
372 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||| || ||| | ||||||||||| |
|
|
| T |
4398300 |
gaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
4398355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 4519701 - 4519347
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| ||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || |
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|
| T |
4519701 |
aaaagtgttagtgtttgaagatcagtc-aactgtcctagcccacgtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttcta |
4519603 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| | |
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|
| T |
4519602 |
ttgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagta |
4519503 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|| | || |||||||||||||||||| | ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
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|
| T |
4519502 |
cattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaa |
4519403 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaagagcatttgaccgatgcagataattgcttgcat |
372 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||| || ||| | ||||||||||| |
|
|
| T |
4519402 |
gaactttaagcctgagaaggaaaaatcatctgactgaagcaaacgattgcttgcat |
4519347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 4498641 - 4498320
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| |||||||||| | || ||| | |||||||| |||||||||||||| |||||| || |
|
|
| T |
4498641 |
aaaagtgttagtgtttgaagatcagtc-aactgtcctagcccacatggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttcta |
4498543 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
4498542 |
ttgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagta |
4498443 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|| | || |||||||||||||||||| | ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
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|
| T |
4498442 |
cattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaa |
4498343 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaa |
339 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
4498342 |
gaactttaagcctgagaaggaaa |
4498320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 18047325 - 18046971
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || |
|
|
| T |
18047325 |
aaaagtgttagtgtttgaagatcagtc-aactgtcctagcccccgtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttcta |
18047227 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
18047226 |
ttgagattttctggcaatatttcaagcttagaacaatcagcaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagta |
18047127 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|| | || |||||||||||||||||| | ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
|
|
| T |
18047126 |
cattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaa |
18047027 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaagagcatttgaccgatgcagataattgcttgcat |
372 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||| || ||| | ||||||||||| |
|
|
| T |
18047026 |
gaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
18046971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 18033828 - 18034182
Alignment:
| Q |
19 |
aaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagactttta |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| ||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || |
|
|
| T |
18033828 |
aaaagtgttagtgtttgaagatcagtc-aactgtcctagcccacgtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttcta |
18033926 |
T |
|
| Q |
119 |
ctgagattttctggtaatatttcaagctcagaacaatcagaaagttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagca |
216 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
18033927 |
ttgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagta |
18034026 |
T |
|
| Q |
217 |
caatactctttgatagatcaatatatctcagatgcttcatatcttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaa |
316 |
Q |
| |
|
|| | || |||||||||||||||||| | ||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || |
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|
| T |
18034027 |
cattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaa |
18034126 |
T |
|
| Q |
317 |
gaactttaggcctgaaaaggaaagagcatttgaccgatgcagataattgcttgcat |
372 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||| || ||| | ||||||||||| |
|
|
| T |
18034127 |
gaactttaagcctgagaaggaaaaatcatctgactgaagcaaacgattgcttgcat |
18034182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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