View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10019_low_6 (Length: 424)

Name: NF10019_low_6
Description: NF10019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10019_low_6
NF10019_low_6
[»] chr4 (96 HSPs)
chr4 (40-353)||(13021564-13021882)
chr4 (40-407)||(44815223-44815585)
chr4 (40-356)||(12218196-12218512)
chr4 (40-178)||(33730951-33731089)
chr4 (40-175)||(42574822-42574957)
chr4 (40-146)||(11035563-11035669)
chr4 (55-156)||(11973132-11973233)
chr4 (42-178)||(5527382-5527518)
chr4 (176-354)||(44672580-44672758)
chr4 (181-352)||(10726978-10727148)
chr4 (181-352)||(10940747-10940917)
chr4 (177-403)||(5093338-5093563)
chr4 (303-407)||(3730333-3730436)
chr4 (176-356)||(54197610-54197788)
chr4 (240-356)||(55764138-55764254)
chr4 (240-356)||(55828455-55828571)
chr4 (240-356)||(55828581-55828697)
chr4 (40-178)||(3731399-3731537)
chr4 (240-356)||(55828518-55828634)
chr4 (177-407)||(3730269-3730497)
chr4 (247-407)||(11973252-11973412)
chr4 (240-353)||(11973985-11974098)
chr4 (241-353)||(11973603-11973715)
chr4 (240-356)||(55764076-55764191)
chr4 (89-169)||(22139079-22139159)
chr4 (240-353)||(44814832-44814945)
chr4 (240-352)||(3729879-3729991)
chr4 (244-356)||(44815020-44815131)
chr4 (240-356)||(49358240-49358356)
chr4 (240-356)||(5526251-5526369)
chr4 (264-407)||(5526393-5526535)
chr4 (305-407)||(11973375-11973476)
chr4 (240-354)||(44672769-44672884)
chr4 (240-405)||(49358131-49358293)
chr4 (240-407)||(55764152-55764317)
chr4 (244-356)||(3730255-3730368)
chr4 (240-356)||(5093465-5093581)
chr4 (304-356)||(10726775-10726827)
chr4 (304-356)||(10940544-10940596)
chr4 (240-403)||(5093719-5093883)
chr4 (89-156)||(22139804-22139871)
chr4 (240-352)||(38001778-38001890)
chr4 (240-294)||(11037263-11037317)
chr4 (240-338)||(38001920-38002019)
chr4 (244-356)||(3730188-3730304)
chr4 (303-356)||(5093848-5093901)
chr4 (303-356)||(10727037-10727090)
chr4 (303-356)||(10940806-10940859)
chr4 (303-356)||(11036953-11037006)
chr4 (270-356)||(13021364-13021450)
chr4 (181-277)||(24425651-24425748)
chr4 (303-356)||(38001837-38001890)
chr4 (240-356)||(5526379-5526496)
chr4 (240-353)||(10726652-10726764)
chr4 (240-353)||(10940421-10940533)
chr4 (240-353)||(11974390-11974503)
chr4 (240-350)||(12217944-12218056)
chr4 (180-231)||(38002202-38002254)
chr4 (240-353)||(49358118-49358229)
chr4 (240-356)||(3729938-3730053)
chr4 (240-356)||(11974327-11974443)
chr4 (305-356)||(12217341-12217392)
chr4 (244-356)||(33729461-33729573)
chr4 (242-356)||(13021300-13021415)
chr4 (240-294)||(33729613-33729667)
chr4 (240-354)||(44814894-44815009)
chr4 (245-407)||(55828595-55828756)
chr4 (303-352)||(3730129-3730178)
chr4 (303-356)||(10726711-10726764)
chr4 (303-356)||(10940480-10940533)
chr4 (303-356)||(11037078-11037131)
chr4 (303-356)||(11037263-11037316)
chr4 (303-356)||(33729614-33729667)
chr4 (181-214)||(33729717-33729750)
chr4 (303-356)||(38001966-38002019)
chr4 (303-348)||(54197924-54197969)
chr4 (240-353)||(3729815-3729928)
chr4 (240-356)||(44814956-44815073)
chr4 (308-356)||(44815209-44815257)
chr4 (260-356)||(11974222-11974318)
chr4 (303-353)||(54197984-54198034)
chr4 (307-352)||(10726911-10726956)
chr4 (307-352)||(10940680-10940725)
chr4 (303-356)||(11037199-11037252)
chr4 (303-352)||(11973921-11973970)
chr4 (303-356)||(12218003-12218056)
chr4 (307-356)||(13021493-13021542)
chr4 (307-356)||(44672648-44672697)
chr4 (303-356)||(44672769-44672822)
chr4 (303-356)||(44672896-44672949)
chr4 (370-407)||(44815096-44815132)
chr4 (303-356)||(49358405-49358457)
chr4 (303-356)||(54197798-54197850)
chr4 (371-407)||(12218274-12218309)
chr4 (366-414)||(13021500-13021547)
chr4 (304-356)||(49358468-49358520)
[»] chr7 (58 HSPs)
chr7 (40-356)||(9301375-9301691)
chr7 (40-356)||(9305813-9306129)
chr7 (40-292)||(20480798-20481048)
chr7 (42-178)||(20615449-20615585)
chr7 (40-178)||(20654153-20654291)
chr7 (176-294)||(10271430-10271549)
chr7 (240-353)||(9329921-9330034)
chr7 (240-356)||(20618017-20618132)
chr7 (303-407)||(47221396-47221500)
chr7 (175-231)||(47222209-47222265)
chr7 (240-356)||(9330239-9330355)
chr7 (308-407)||(47222033-47222130)
chr7 (40-102)||(25800304-25800366)
chr7 (40-102)||(35493649-35493711)
chr7 (175-356)||(20616495-20616677)
chr7 (240-356)||(9301798-9301915)
chr7 (240-356)||(9306236-9306353)
chr7 (240-356)||(20480380-20480496)
chr7 (240-356)||(20618079-20618195)
chr7 (249-356)||(20617963-20618070)
chr7 (245-356)||(47222019-47222130)
chr7 (303-356)||(19373430-19373483)
chr7 (303-356)||(20480507-20480560)
chr7 (242-356)||(20657396-20657509)
chr7 (303-407)||(10271691-10271794)
chr7 (240-356)||(20657267-20657384)
chr7 (272-356)||(25801316-25801400)
chr7 (240-347)||(11320724-11320830)
chr7 (303-356)||(10271495-10271548)
chr7 (242-407)||(10271565-10271730)
chr7 (240-353)||(10271691-10271805)
chr7 (303-352)||(11320856-11320905)
chr7 (307-352)||(47221386-47221431)
chr7 (240-356)||(9330112-9330229)
chr7 (307-407)||(11320664-11320763)
chr7 (303-355)||(20480798-20480850)
chr7 (175-230)||(20655184-20655239)
chr7 (305-356)||(25801150-25801201)
chr7 (303-356)||(11320724-11320777)
chr7 (303-355)||(19373299-19373352)
chr7 (303-356)||(39678187-39678240)
chr7 (307-356)||(41755027-41755076)
chr7 (244-353)||(41755027-41755136)
chr7 (305-356)||(9330045-9330096)
chr7 (312-407)||(20617963-20618056)
chr7 (242-356)||(9329981-9330096)
chr7 (303-353)||(11320982-11321032)
chr7 (240-294)||(19373430-19373484)
chr7 (240-294)||(19373636-19373690)
chr7 (303-356)||(20480652-20480705)
chr7 (303-356)||(35492512-35492565)
chr7 (371-407)||(10271499-10271534)
chr7 (180-231)||(11320598-11320650)
chr7 (367-407)||(11320856-11320895)
chr7 (312-356)||(20657212-20657256)
chr7 (371-407)||(20657398-20657433)
chr7 (324-356)||(35492768-35492800)
chr7 (242-290)||(39678126-39678174)
[»] chr2 (54 HSPs)
chr2 (40-230)||(25047071-25047260)
chr2 (175-403)||(44972195-44972423)
chr2 (44-178)||(27340423-27340556)
chr2 (177-356)||(7062305-7062483)
chr2 (175-404)||(35192627-35192853)
chr2 (240-356)||(44539043-44539159)
chr2 (176-407)||(310166-310395)
chr2 (240-353)||(27339777-27339890)
chr2 (73-154)||(43528933-43529014)
chr2 (240-356)||(27339964-27340080)
chr2 (305-403)||(25047271-25047368)
chr2 (242-353)||(44972707-44972818)
chr2 (183-356)||(19901346-19901520)
chr2 (102-178)||(19900271-19900347)
chr2 (240-353)||(21956631-21956744)
chr2 (181-276)||(40633742-40633837)
chr2 (240-355)||(21962648-21962763)
chr2 (240-355)||(44972452-44972566)
chr2 (310-407)||(27340041-27340137)
chr2 (240-353)||(7062183-7062296)
chr2 (244-353)||(35193068-35193176)
chr2 (240-353)||(43528766-43528878)
chr2 (240-356)||(44972388-44972505)
chr2 (303-403)||(44972388-44972487)
chr2 (305-356)||(13595050-13595101)
chr2 (240-354)||(310154-310269)
chr2 (303-356)||(13595800-13595853)
chr2 (244-352)||(35192821-35192933)
chr2 (307-356)||(35193068-35193117)
chr2 (303-407)||(7062319-7062421)
chr2 (240-295)||(310086-310141)
chr2 (305-356)||(13595864-13595915)
chr2 (309-352)||(27340217-27340260)
chr2 (240-356)||(44539106-44539222)
chr2 (305-356)||(44972643-44972694)
chr2 (40-86)||(35191384-35191430)
chr2 (303-356)||(25047462-25047515)
chr2 (303-356)||(27339900-27339953)
chr2 (240-356)||(310088-310205)
chr2 (240-353)||(13594830-13594942)
chr2 (303-355)||(21956692-21956744)
chr2 (40-83)||(19900233-19900276)
chr2 (240-356)||(27339837-27339953)
chr2 (180-231)||(34757152-34757202)
chr2 (240-356)||(44972514-44972630)
chr2 (303-356)||(13594889-13594942)
chr2 (303-356)||(13595740-13595792)
chr2 (303-356)||(35192946-35192999)
chr2 (303-356)||(44538981-44539034)
chr2 (242-294)||(13595049-13595101)
chr2 (371-407)||(13595064-13595099)
chr2 (371-407)||(21956642-21956677)
chr2 (240-288)||(40633857-40633905)
chr2 (304-356)||(44538851-44538903)
[»] chr6 (48 HSPs)
chr6 (40-218)||(16307221-16307399)
chr6 (40-178)||(19708457-19708595)
chr6 (40-179)||(17589043-17589179)
chr6 (176-356)||(27900502-27900681)
chr6 (182-355)||(19709215-19709388)
chr6 (240-356)||(10928272-10928388)
chr6 (240-353)||(14894744-14894857)
chr6 (240-407)||(16306281-16306450)
chr6 (303-407)||(2537700-2537803)
chr6 (259-356)||(3677461-3677558)
chr6 (240-353)||(32249576-32249688)
chr6 (240-353)||(3676986-3677100)
chr6 (240-356)||(2537432-2537549)
chr6 (240-353)||(10928213-10928325)
chr6 (240-356)||(16306043-16306159)
chr6 (240-356)||(27900755-27900871)
chr6 (240-407)||(3676997-3677163)
chr6 (40-125)||(2537845-2537929)
chr6 (303-356)||(10928465-10928518)
chr6 (168-231)||(10928775-10928839)
chr6 (240-352)||(2438470-2438581)
chr6 (240-356)||(27900818-27900933)
chr6 (303-405)||(19709272-19709373)
chr6 (303-356)||(2438248-2438301)
chr6 (303-356)||(11990011-11990064)
chr6 (303-407)||(10928349-10928451)
chr6 (242-356)||(23915116-23915232)
chr6 (40-102)||(32248684-32248746)
chr6 (303-356)||(2537620-2537673)
chr6 (303-356)||(3677333-3677386)
chr6 (270-356)||(17589561-17589647)
chr6 (240-356)||(2537686-2537803)
chr6 (307-347)||(17589237-17589277)
chr6 (240-356)||(17589594-17589710)
chr6 (303-353)||(2438470-2438520)
chr6 (240-294)||(2438532-2438586)
chr6 (303-353)||(3676659-3676709)
chr6 (303-353)||(7771871-7771921)
chr6 (40-82)||(23914278-23914320)
chr6 (324-401)||(10928608-10928684)
chr6 (305-350)||(16306172-16306217)
chr6 (303-356)||(17589403-17589456)
chr6 (303-356)||(17589782-17589835)
chr6 (303-356)||(27900692-27900745)
chr6 (303-356)||(32249451-32249504)
chr6 (303-407)||(32249576-32249677)
chr6 (308-356)||(175022-175070)
chr6 (303-355)||(32249512-32249563)
[»] chr3 (52 HSPs)
chr3 (40-178)||(35369981-35370118)
chr3 (17-178)||(28098331-28098492)
chr3 (40-178)||(53360957-53361095)
chr3 (175-356)||(28096925-28097109)
chr3 (40-178)||(51138029-51138167)
chr3 (181-356)||(51139081-51139257)
chr3 (40-137)||(7107421-7107518)
chr3 (175-354)||(53359943-53360122)
chr3 (240-356)||(35369596-35369713)
chr3 (161-294)||(7115136-7115268)
chr3 (240-356)||(35863289-35863405)
chr3 (176-351)||(27003717-27003894)
chr3 (177-353)||(18196966-18197144)
chr3 (240-353)||(53359820-53359933)
chr3 (176-230)||(3422144-3422198)
chr3 (307-356)||(22175993-22176042)
chr3 (240-356)||(28096672-28096788)
chr3 (240-356)||(51139270-51139386)
chr3 (240-355)||(35369534-35369649)
chr3 (307-356)||(22101056-22101105)
chr3 (240-405)||(28096751-28096914)
chr3 (240-356)||(22100796-22100912)
chr3 (176-231)||(34492832-34492887)
chr3 (244-356)||(35369786-35369898)
chr3 (240-353)||(35863352-35863467)
chr3 (178-231)||(22176054-22176107)
chr3 (240-353)||(28096612-28096725)
chr3 (240-356)||(22175735-22175851)
chr3 (184-231)||(28212704-28212751)
chr3 (303-356)||(13473576-13473629)
chr3 (251-356)||(44822559-44822665)
chr3 (303-356)||(53360005-53360058)
chr3 (303-351)||(34492420-34492468)
chr3 (303-407)||(35863289-35863391)
chr3 (176-231)||(37436695-37436751)
chr3 (240-353)||(44822500-44822612)
chr3 (303-350)||(22100926-22100973)
chr3 (303-350)||(22175865-22175912)
chr3 (369-407)||(35369863-35369900)
chr3 (40-102)||(44823560-44823622)
chr3 (240-356)||(51139333-51139452)
chr3 (307-356)||(3422212-3422261)
chr3 (241-290)||(3422334-3422383)
chr3 (366-407)||(7115349-7115389)
chr3 (307-356)||(7115354-7115403)
chr3 (194-231)||(13473691-13473728)
chr3 (303-356)||(35369469-35369522)
chr3 (303-356)||(53359880-53359933)
chr3 (309-353)||(7115612-7115656)
chr3 (371-407)||(18196977-18197012)
chr3 (371-407)||(28097006-28097041)
chr3 (371-407)||(35369674-35369709)
[»] chr1 (48 HSPs)
chr1 (40-178)||(20131700-20131838)
chr1 (175-407)||(8528772-8529004)
chr1 (40-144)||(24161534-24161638)
chr1 (40-148)||(44506353-44506461)
chr1 (48-174)||(14495656-14495782)
chr1 (40-102)||(20608982-20609044)
chr1 (179-356)||(30143671-30143849)
chr1 (176-407)||(50232106-50232339)
chr1 (175-356)||(29698503-29698682)
chr1 (242-407)||(50232042-50232206)
chr1 (240-353)||(14495113-14495226)
chr1 (303-407)||(29698565-29698668)
chr1 (244-356)||(30146416-30146528)
chr1 (244-356)||(50231904-50232014)
chr1 (240-356)||(50232028-50232145)
chr1 (240-352)||(23997744-23997855)
chr1 (67-178)||(29697467-29697578)
chr1 (240-356)||(30143796-30143912)
chr1 (241-356)||(237548-237661)
chr1 (303-356)||(8528499-8528552)
chr1 (243-356)||(43574667-43574780)
chr1 (240-353)||(237490-237601)
chr1 (303-355)||(14495303-14495355)
chr1 (303-407)||(20132253-20132357)
chr1 (305-356)||(14495495-14495546)
chr1 (303-353)||(30158512-30158562)
chr1 (303-356)||(23997802-23997855)
chr1 (303-356)||(43574851-43574904)
chr1 (303-355)||(20132751-20132803)
chr1 (240-356)||(30146475-30146592)
chr1 (240-407)||(8528513-8528680)
chr1 (244-407)||(24162446-24162608)
chr1 (303-353)||(30143986-30144036)
chr1 (303-353)||(30146730-30146780)
chr1 (240-294)||(43574851-43574905)
chr1 (307-356)||(8528758-8528807)
chr1 (303-356)||(14495173-14495226)
chr1 (303-356)||(29698759-29698812)
chr1 (245-407)||(30158391-30158551)
chr1 (307-356)||(43574606-43574655)
chr1 (240-353)||(8528439-8528552)
chr1 (240-356)||(30143859-30143976)
chr1 (371-414)||(23997809-23997851)
chr1 (303-356)||(20132317-20132371)
chr1 (307-353)||(24162573-24162619)
chr1 (240-294)||(50231903-50231957)
chr1 (303-356)||(30146603-30146656)
chr1 (371-407)||(43574855-43574890)
[»] chr8 (20 HSPs)
chr8 (40-178)||(23637149-23637287)
chr8 (43-178)||(23637525-23637660)
chr8 (40-178)||(24447225-24447362)
chr8 (175-335)||(24410380-24410539)
chr8 (240-353)||(24432562-24432675)
chr8 (240-356)||(24432622-24432738)
chr8 (175-230)||(24432924-24432979)
chr8 (186-290)||(27023094-27023197)
chr8 (242-356)||(24410103-24410218)
chr8 (40-102)||(26529985-26530047)
chr8 (303-356)||(24409845-24409898)
chr8 (240-353)||(24409785-24409898)
chr8 (303-354)||(24410231-24410282)
chr8 (305-356)||(24410422-24410473)
chr8 (176-231)||(26528974-26529029)
chr8 (303-356)||(24432859-24432915)
chr8 (303-353)||(27023147-27023197)
chr8 (310-356)||(33848532-33848578)
chr8 (242-294)||(24410039-24410091)
chr8 (328-356)||(24410351-24410379)
[»] chr5 (24 HSPs)
chr5 (40-178)||(28257084-28257221)
chr5 (40-178)||(42773014-42773157)
chr5 (176-355)||(28263140-28263320)
chr5 (179-407)||(38938168-38938393)
chr5 (176-407)||(1197477-1197706)
chr5 (176-295)||(42774890-42775009)
chr5 (240-407)||(38938290-38938457)
chr5 (242-356)||(1197463-1197577)
chr5 (240-295)||(3160111-3160166)
chr5 (240-353)||(42775083-42775198)
chr5 (240-353)||(28263460-28263573)
chr5 (182-231)||(3159800-3159849)
chr5 (303-356)||(28222364-28222417)
chr5 (303-356)||(28263204-28263257)
chr5 (303-407)||(42775083-42775187)
chr5 (304-356)||(28604521-28604573)
chr5 (180-218)||(14655469-14655507)
chr5 (306-356)||(28263401-28263451)
chr5 (303-407)||(28263460-28263562)
chr5 (260-356)||(3159942-3160038)
chr5 (303-354)||(14655526-14655577)
chr5 (307-356)||(3159863-3159912)
chr5 (303-356)||(14655581-14655634)
chr5 (303-356)||(42774954-42775007)
[»] scaffold0086 (7 HSPs)
scaffold0086 (40-148)||(49483-49591)
scaffold0086 (240-407)||(48691-48856)
scaffold0086 (240-356)||(48677-48794)
scaffold0086 (303-353)||(48429-48479)
scaffold0086 (303-356)||(48487-48540)
scaffold0086 (303-356)||(48551-48604)
scaffold0086 (240-294)||(48676-48730)
[»] scaffold0990 (1 HSPs)
scaffold0990 (40-148)||(1707-1815)
[»] scaffold0025 (1 HSPs)
scaffold0025 (303-356)||(3125-3178)
[»] scaffold0123 (5 HSPs)
scaffold0123 (240-353)||(16872-16984)
scaffold0123 (240-356)||(16807-16925)
scaffold0123 (303-356)||(16744-16797)
scaffold0123 (245-295)||(16642-16692)
scaffold0123 (308-356)||(16642-16690)
[»] scaffold0077 (1 HSPs)
scaffold0077 (42-167)||(43430-43555)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 96)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 353
Target Start/End: Complemental strand, 13021882 - 13021564
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13021882 acctttaaaatatgtggtgggatacttccttgaacaattgagtttaggaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 13021783  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaa--tcnnnnnn 237  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |           
T  13021782 acaaattatattcttctcttggaaactgattgataattaatatttaatatagtgctaacaaaaatttttctaaaatattctgagtcctaatttttttttt 13021683  T
Q  238 nnagaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata---nnnnnnnagaggatttaaagttcaatcgttaacattata 334  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||    
T  13021682 ttagaggatttaaagtctaatattaaacattgttttttgttcatatttgttactaatattttttttttagagaatttaaagttcaatcgttaacattata 13021583  T
Q  335 ttttgctcacgtttgttac 353  Q
    |||||||||||||||||||    
T  13021582 ttttgctcacgtttgttac 13021564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 40 - 407
Target Start/End: Complemental strand, 44815585 - 44815223
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||| ||| ||| ||||||||||||||||||||||    
T  44815585 acctttaaaatatgtggtgggatacttccttgagcaattgagtttaggaattcctgttga-ataagttacgagtatc-ccttcaacctcgtcaaatgaca 44815488  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnn 239  Q
    ||||||||| |  ||||  | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||| ||            
T  44815487 acaaattatgtcattctcgtagaaactgattgataattaatatttaatatagtgctaacagatatttttctaaaatatttcgagtcctagtc-ttttttt 44815389  T
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||  | | | |||||||||||        |||||||||||||| ||||| |||||||||||||||     
T  44815388 agaggatttaaagtcaaatctttaacattatttttttcttaca-ttgttactaatctttttttagaggatttaaagtccaatctttaacattatattttc 44815290  T
Q  340 ctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||||||         || |  ||||||||| ||||||||||||||||||||||||||    
T  44815289 ctcacgtttgttactaatctttttttcatagtatttaaagt-caaatctttaacattattttttgctc 44815223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 40 - 356
Target Start/End: Complemental strand, 12218512 - 12218196
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||| |||||||| ||||||||||||||||||||||||| ||| ||| ||||  |||||||||||  |||||| ||| ||||||||||||||||||||||    
T  12218512 acctataaaatatatggtgggatacttccttgaacaattaagtgtaggaatttctgttgatataaactatgagtatccccttcaacctcgtcaaatgaca 12218413  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnn 239  Q
    ||||||||| |||||||  | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||            
T  12218412 acaaattatgttcttctccttgaaactggttgataattaatatttaatatagtgctaacaaatctttttctaaaatattttgattcataatc-ttttttt 12218314  T
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  ||||| || |||         | |||||||||||| ||||| |||||||||||||||    
T  12218313 agaggatttaaagtccaatctttaacattattttttgctcaagtttgtaaccaatcttttttttaaaggatttaaagtccaatctttaacattatatttt 12218214  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  12218213 gctcacgtttgttactaa 12218196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 33731089 - 33730951
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |||||  |||||||||||||||||| ||| ||||||||||||||||||||||    
T  33731089 acctttaaaatatgtggtgggatacttccttgagcaattgagtttaagaattcccgttgatataagttatgagtatccccttcaacctcgtcaaatgaca 33730990  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    | ||||||| |||||||  || |||||||||||||||||    
T  33730989 ataaattatgttcttctcctgaaaactgattgataatta 33730951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 42574822 - 42574957
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||| ||||||| || || ||||||||    
T  42574822 acctttaaaatatgtgttgggatacttccttgagcagttgagtttaggaattcatgttgatataagttatgagtatccccttcaatctagttaaatgaca 42574921  T
Q  140 acaaattatattcttctattggaaactgattgataa 175  Q
    ||||||||| || ||||  || ||||| ||||||||    
T  42574922 acaaattatgttattctcgtgcaaactaattgataa 42574957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 11035563 - 11035669
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  11035563 acctttaaaatatttggtgggattcttccttgagcaattgagtttaagaattcatgttgatataagttatgagtatcctcttcaacctcgtcaaatgaca 11035662  T
Q  140 acaaatt 146  Q
    |||||||    
T  11035663 acaaatt 11035669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 11973132 - 11973233
Alignment:
Q  55 ggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattctt 154  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||    
T  11973132 ggtgggatacttccttgagcaattgagtttaagaattcatgttgatataagttatgagtatccccttcaacctcgtcaaatgacaacaaagtatgttctt 11973231  T
Q  155 ct 156  Q
    ||    
T  11973232 ct 11973233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 5527518 - 5527382
Alignment:
Q  42 ctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaac 141  Q
    |||||||||||||| |||||| ||||||||| || ||||||||| |||||||||||||||||||||||||| ||  |||||||| |||| ||||||||||    
T  5527518 ctttaaaatatgtgatgggattcttccttgagcagttgagtttaaaaattcatgttgatataagttatgagtattcccttcaacatcgttaaatgacaac 5527419  T
Q  142 aaattatattcttctattggaaactgattgataatta 178  Q
    ||||||| || ||||  || ||||| |||||||||||    
T  5527418 aaattatgttattctcatgaaaactaattgataatta 5527382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 354
Target Start/End: Original strand, 44672580 - 44672758
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||        ||| ||||||||| | ||| ||||||| | ||||||    
T  44672580 ttaatatttaatatagtgctaacaaatctttttctaaaatattttgagtcataatcttttttttagatgatttaaagaccaatctttaacaatatttttt 44672679  T
Q  276 gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttact 354  Q
    | |||  ||||||||||||        |||||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  44672680 gctcacgtttgttactaatctttttttagaggatttaaagttcaatctttaaaatttttttttgctcacgtttgttact 44672758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 352
Target Start/End: Complemental strand, 10727148 - 10726978
Alignment:
Q  181 atttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgttca 280  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||        |||| |||||||||  ||| ||||||||| ||||||| |||    
T  10727148 atttaatatagtgttaacaaatatttttttaaaatattttgagtcctaatcttttttt-agagtatttaaagtacaatctttaacattattttttgctca 10727050  T
Q  281 tatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
      ||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10727049 cgtttgttactaatcttttttgagaggatttaaagttcaatctttaacattatattttgctcacgtttgtta 10726978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 352
Target Start/End: Complemental strand, 10940917 - 10940747
Alignment:
Q  181 atttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgttca 280  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||        |||| |||||||||  ||| ||||||||| ||||||| |||    
T  10940917 atttaatatagtgttaacaaatatttttttaaaatattttgagtcctaatcttttttt-agagtatttaaagtacaatctttaacattattttttgctca 10940819  T
Q  281 tatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
      ||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10940818 cgtttgttactaatcttttttgagaggatttaaagttcaatctttaacattatattttgctcacgtttgtta 10940747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 403
Target Start/End: Original strand, 5093338 - 5093563
Alignment:
Q  177 taatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttg 276  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||         ||||||||||||||  ||| |||||| || |||||||    
T  5093338 taatatttaatatagtgctaacaaatctttttctaaaatattttgagtcccaat-atttttttagaggatttaaagttcaatctttaactttattttttg 5093436  T
Q  277 ttcatatttgttactaa--tannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatt 374  Q
      ||| |||||||||||  |        |||||||||||||| ||||  |||||||||||||||||||| ||||||||||||         |||| ||||    
T  5093437 cccatgtttgttactaatcttttttttaagaggatttaaagtccaat-tttaacattatattttgctcatgtttgttactaatctttttttcagaggatt 5093535  T
Q  375 taaagtccaaatctttaacattatttttt 403  Q
    |||||||| ||||||||||||||||||||    
T  5093536 taaagtcc-aatctttaacattatttttt 5093563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 3730436 - 3730333
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||||||    
T  3730436 agaggatttaaagttcaatctttaacattattttttgctcacgtttgttactaatttttttatcagaagatttaaagt-ctaatctttaacattattttt 3730338  T
Q  403 tgctc 407  Q
    |||||    
T  3730337 tgctc 3730333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 176 - 356
Target Start/End: Original strand, 54197610 - 54197788
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||        ||| ||||||||||||||| ||||||| | ||||||    
T  54197610 ttaatatataatatagtgctaacaaat-tttttctaaaatattttgagtcctaatctttttgttagatgatttaaagtctaatctttaacaatatttttt 54197708  T
Q  276 gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    | |||  |||||||||||||       | |||||||||| | | ||  |||||||||| ||||||||||||||||| ||||    
T  54197709 gctcacgtttgttactaatatttttttataggatttaaaatccgat-tttaacattattttttgctcacgtttgttgctaa 54197788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 55764254 - 55764138
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||||||||||||||| || ||||| ||| ||||||| |||| |||||||||||||       |||||||||||||| ||||| |||||||||| |||||    
T  55764254 agaggatttaaagtctcatctttaatattattttttgctcatgtttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttg 55764155  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  55764154 ctcatgtttgttactaa 55764138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 55828571 - 55828455
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||        ||||||||||||||  |||| |||||||||| |||||    
T  55828571 agaggatttaaagtctaatctttaacattattttttgctcatgtttgttactaatttttttttagaggatttaaagtctaatctttaacattattttttg 55828472  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  55828471 ctcatgtttgttactaa 55828455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 55828697 - 55828581
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||||||||||||||| || ||||| ||| ||||||| |||| |||||||||||||       |||||||||||||| ||||| |||||||||| |||||    
T  55828697 agaggatttaaagtctcatctttaatattattttttgctcatgtttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttg 55828598  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  55828597 ctcatgtttgttactaa 55828581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 3731537 - 3731399
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||| | | | | || |||||| |||| || ||| ||||||||||| | ||||||||    
T  3731537 acctttaaaatatgtggtgtgatacttccttgagcagttgagtttaggagtccctcttaatataaattataagtatccccttcaacctcattaaatgaca 3731438  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || |||| || |||||| | |||||||||    
T  3731437 acaaattatgttattctcttagaaactaaatgataatta 3731399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 55828634 - 55828518
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||        ||||||||||||||  |||| |||||||||| |||||    
T  55828634 agaggatttaaagtccaatctttaacattattttttgctcatgtttgttactaatttttttttagaggatttaaagtctaatctttaacattattttttg 55828535  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  55828534 ctcatgtttgttactaa 55828518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 407
Target Start/End: Complemental strand, 3730497 - 3730269
Alignment:
Q  177 taatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttg 276  Q
    |||||||||||||||||||||||||     |||||||||||| | |||||||||         ||||||||||||||  ||| ||||||||| |||||||    
T  3730497 taatatttaatatagtgctaacaaaaaaaattctaaaatatttttagtcctaat--tttttttagaggatttaaagttcaatctttaacattattttttg 3730400  T
Q  277 ttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagattt 375  Q
     |||  ||||||||||||         ||| ||||||||||  |||| |||||||||| ||||||||||||||||||||||         ||||||||||    
T  3730399 ctcacgtttgttactaatttttttatcagaagatttaaagtctaatctttaacattattttttgctcacgtttgttactaatttttttatcagaagattt 3730300  T
Q  376 aaagtccaaatctttaacattattttttgctc 407  Q
    |||||| || ||||||||||||||||||||||    
T  3730299 aaagtctaa-tctttaacattattttttgctc 3730269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 407
Target Start/End: Original strand, 11973252 - 11973412
Alignment:
Q  247 ttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgctcacg 345  Q
    |||||||| ||| ||||||||| ||||||| |||  |||||||||||||        |||||||||||||||||||| |||||||||||||||||| | |    
T  11973252 ttaaagtccaatttttaacattattttttgctcaagtttgttactaatattttttttagaggatttaaagttcaatctttaacattatattttgcttatg 11973351  T
Q  346 tttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    || ||||||||         || | |||||||||||| ||||||||||||||||||||||||    
T  11973352 ttcgttactaatctttttttcataggatttaaagtcc-aatctttaacattattttttgctc 11973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 11973985 - 11974098
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||||||||||||| ||| ||||| | |||| |||||||||||||       ||  |||||||||||||||| ||| |||||  |||||    
T  11973985 agaggatttaaagtctaatatttaaaattatttttagctcatgtttgttactaatatttttttagtagatttaaagttcaatctttaccattaatttttg 11974084  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  11974085 ctcacgtttgttac 11974098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 11973603 - 11973715
Alignment:
Q  241 gaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgc 340  Q
    |||||||||||||||||||||||| ||| ||||| | |||  |||||||||||||       || ||||||||||||||||| ||| |||||  ||||||    
T  11973603 gaggatttaaagtctaatatttaaaattatttttagctcacgtttgttactaatatttttttaggggatttaaagttcaatctttaccattaatttttgc 11973702  T
Q  341 tcacgtttgttac 353  Q
    |||||||||||||    
T  11973703 tcacgtttgttac 11973715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 55764191 - 55764076
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||        ||||||||||||||  |||| |||||||||| |||||    
T  55764191 agaggatttaaagtccaatctttaacattattttttgctcatgtttgttactaat-tttttttagaggatttaaagtctaatctttaacattattttttg 55764093  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  55764092 ctcatgtttgttactaa 55764076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 22139079 - 22139159
Alignment:
Q  89 attcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattcttctattggaaactgat 169  Q
    |||| ||||||||||||| ||| |  || ||||||||||||||||||||||||||||||||||||||| | || |||||||    
T  22139079 attcttgttgatataagtcatgtgcgtcaccttcaacctcgtcaaatgacaacaaattatattcttctctagggaactgat 22139159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 44814945 - 44814832
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||| |||||||||||||| ||||||||| ||||||| |||  ||||||||| ||        |||| ||||||||||||||| ||| |||||| |||||    
T  44814945 agagaatttaaagtctaatctttaacattattttttgctcacgtttgttactgatctttttttagagaatttaaagttcaatctttaccattattttttg 44814846  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  44814845 ctcacgtttgttac 44814832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 3729991 - 3729879
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  |||||| |||||        |||||||||||||| ||||| ||| |||||| |||||    
T  3729991 agaggatttaaagtccaatttttaacattattttttgctcacgtttgttgctaatctttttttagaggatttaaagtacaatctttagcattattttttg 3729892  T
Q  340 ctcacgtttgtta 352  Q
    |||||||||||||    
T  3729891 ctcacgtttgtta 3729879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 44815131 - 44815020
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    ||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||        |||||||||||||| ||||| |||||| ||| |||||||||    
T  44815131 gatttaaagtccaatctttaacattattttttgctcag-tttgttactaatcttttcttagaggatttaaagtccaatctttaacaatatcttttgctca 44815033  T
Q  344 cgtttgttactaa 356  Q
    |||||||||||||    
T  44815032 cgtttgttactaa 44815020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 49358356 - 49358240
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||||||||||| | ||||||| |||  ||||||||||||        ||||||||||||||  |||  |||||| ||| |||||    
T  49358356 agaggatttaaagtcaaatatttaacaatattttttgctcacgtttgttactaatctttttttagaggatttaaagtcaaatatttaacaatattttttg 49358257  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  49358256 ctcacgtttgttactaa 49358240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 5526369 - 5526251
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn--agaggatttaaagttcaatcgttaacattatattt 337  Q
    |||||||||||||||| || ||||||||| | |||||||||  ||||||||||||          |||||||||||||| ||||| |||||| ||| |||    
T  5526369 agaggatttaaagtctgatttttaacattatattttgttcacgtttgttactaatttttttttttagaggatttaaagtccaatctttaacaatattttt 5526270  T
Q  338 tgctcacgtttgttactaa 356  Q
    |||||||||||||||||||    
T  5526269 tgctcacgtttgttactaa 5526251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 407
Target Start/End: Complemental strand, 5526535 - 5526393
Alignment:
Q  264 acattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnn 363  Q
    ||||| ||||||| |||  |||||||||||||       |||||||||||| |  ||||  ||||||||||||||| ||||||||||||||||           
T  5526535 acattattttttgctcacgtttgttactaatatttttttagaggatttaaaatctaatctctaacattatattttgttcacgtttgttactaatttttta 5526436  T
Q  364 nccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
      ||||||||||||||||| ||| ||||||||||||||||||||    
T  5526435 atcagaagatttaaagtcc-aatgtttaacattattttttgctc 5526393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 11973375 - 11973476
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttg 404  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||| ||||||          ||| |||||||||| |||||||||||||||||||||||    
T  11973375 aggatttaaagtccaatctttaacattattttttgctcacgtttgatactaatcttttctttagaggatttaaagt-caaatctttaacattattttttg 11973473  T
Q  405 ctc 407  Q
    |||    
T  11973474 ctc 11973476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 44672769 - 44672884
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||||||||||| || | |||||||||||||        |||| ||||||| | ||||| |||||| ||| ||||    
T  44672769 agaggatttaaagtccaatctttaacattgttttttgctcttgtttgttactaatattttttttagagaatttaaattccaatctttaacaatatttttt 44672868  T
Q  339 gctcacgtttgttact 354  Q
    ||||||||||||||||    
T  44672869 gctcacgtttgttact 44672884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 49358293 - 49358131
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||||||||||| | ||||||| |||  ||||||||||||         |||||||||||||| ||||| ||||| |||| ||||    
T  49358293 agaggatttaaagtcaaatatttaacaatattttttgctcacgtttgttactaatctttcttttagaggatttaaagtccaatctttaacgttatttttt 49358194  T
Q  339 gctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgc 405  Q
     |||||||||||||||||          ||| |||||||||||| ||||||||||||||||||||||    
T  49358193 cctcacgtttgttactaattttttt---agaggatttaaagtcc-aatctttaacattattttttgc 49358131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 55764317 - 55764152
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||| |||||||||| ||| ||||||||| |||||||||||  ||||||||||||        ||||||||||||||   ||| |||| ||||| |||||    
T  55764317 agagaatttaaagtccaatctttaacattattttttgttcaagtttgttactaatctttttttagaggatttaaagtctcatctttaatattattttttg 55764218  T
Q  340 ctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||| ||||||||||||          ||| |||||||||||| ||||||||||||||||||||||||    
T  55764217 ctcatgtttgttactaatatttttt-tagaggatttaaagtcc-aatctttaacattattttttgctc 55764152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 3730368 - 3730255
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgctc 342  Q
    ||||||||||||||| ||||||||| ||||||| |||  ||||||||||||         ||| ||||||||||  |||| |||||||||| ||||||||    
T  3730368 gatttaaagtctaatctttaacattattttttgctcacgtttgttactaatttttttatcagaagatttaaagtctaatctttaacattattttttgctc 3730269  T
Q  343 acgtttgttactaa 356  Q
    ||||||||||||||    
T  3730268 acgtttgttactaa 3730255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 5093465 - 5093581
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| | ||||| |||| ||||||||||||         |||||||||||||| ||||| |||||||||| ||||    
T  5093465 agaggatttaaagtccaat-tttaacattatattttgctcatgtttgttactaatctttttttcagaggatttaaagtccaatctttaacattatttttt 5093563  T
Q  339 gctcacgtttgttactaa 356  Q
     |||||||||||||||||    
T  5093564 cctcacgtttgttactaa 5093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 10726827 - 10726775
Alignment:
Q  304 gaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||    
T  10726827 gaggatttaaagttcaatctttaacatgattttttgctcacgtttgttactaa 10726775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 10940596 - 10940544
Alignment:
Q  304 gaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||    
T  10940596 gaggatttaaagttcaatctttaacatgattttttgctcacgtttgttactaa 10940544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 403
Target Start/End: Original strand, 5093719 - 5093883
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaa---tannnnnnnagaggatttaaagttcaatcgttaacattatatt 336  Q
    ||||||||||||||| ||| |||||||||  |||||| |||| |||||||||||   |        ||||||||||| || ||||  |||||||||||||    
T  5093719 agaggatttaaagtccaatctttaacattactttttgctcatgtttgttactaatcttttttttttagaggatttaatgtccaat-tttaacattatatt 5093817  T
Q  337 ttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattatttttt 403  Q
    ||||||| ||||||||||||         |||| |||||||||||| ||||||||||||||||||||    
T  5093818 ttgctcatgtttgttactaatctttttttcagaggatttaaagtcc-aatctttaacattatttttt 5093883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 22139871 - 22139804
Alignment:
Q  89 attcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattcttct 156  Q
    |||| ||||||||||||||||  |  || ||||||||||||||||||||||||||||||| |||||||    
T  22139871 attcttgttgatataagttatttgtgtcaccttcaacctcgtcaaatgacaacaaattatgttcttct 22139804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 38001890 - 38001778
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||  ||||||||||||        ||| |||| ||||||||||| ||| |||||| |||||    
T  38001890 agaggatttaaagtccaatctttaacaatattttttgctcacgtttgttactaatctttttttagatgattcaaagttcaatctttaccattattttttg 38001791  T
Q  340 ctcacgtttgtta 352  Q
    |||||||||||||    
T  38001790 ctcacgtttgtta 38001778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 11037263 - 11037317
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  11037263 agaggatttaaagtctaatctttaacattattttttgttcacgtttgttactaat 11037317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 38002019 - 38001920
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||| | ||||||| ||| ||||||||||||||        |||||||||||||||||||| |||||||||| ||||    
T  38002019 agaggatttaaagtccaatctttaacaatattttttgctcacatttgttactaatatttattttagaggatttaaagttcaatctttaacattatttttt 38001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 3730304 - 3730188
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaac---attatattttg 339  Q
    ||||||||||||||| ||||||||| ||||||| |||  |||||||||||||        |||| || |||||||||||| |||||   ||||| |||||    
T  3730304 gatttaaagtctaatctttaacattattttttgctcacgtttgttactaatattttttttagagtatataaagttcaatctttaacattattattttttg 3730205  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  3730204 ctcacgtttgttactaa 3730188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 5093848 - 5093901
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| |||| |||||||||||||||||    
T  5093848 agaggatttaaagtccaatctttaacattattttttcctcacgtttgttactaa 5093901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 10727090 - 10727037
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  10727090 agagtatttaaagtacaatctttaacattattttttgctcacgtttgttactaa 10727037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 10940859 - 10940806
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  10940859 agagtatttaaagtacaatctttaacattattttttgctcacgtttgttactaa 10940806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 11036953 - 11037006
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||    
T  11036953 agaggatttaaagtccaatctttaaaattattttttgctcacgtttgttactaa 11037006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 13021450 - 13021364
Alignment:
Q  270 ttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||  |||||||||||||       | |||||||||||||||||  ||||| |||| ||||||||||||||||||||||    
T  13021450 ttttttgttcacgtttgttactaatatttttttaaaggatttaaagttcaatatttaaccttattttttgctcacgtttgttactaa 13021364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 24425748 - 24425651
Alignment:
Q  181 atttaatatagtgctaacaaa-tctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgt 277  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||        |||||||||||| |  ||| ||||||||| ||||||||    
T  24425748 atttaatatagtgctaacaaaatctttttctaaaatattttgaatcctaatctttttcttagaggatttaaaattcaatttttaacattattttttgt 24425651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 38001890 - 38001837
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||    
T  38001890 agaggatttaaagtccaatctttaacaatattttttgctcacgtttgttactaa 38001837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 5526496 - 5526379
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||||||||||| |||||| | ||||||| | |||||||||  ||||||||||||         ||| |||||||||| ||||  |||||||||| ||||    
T  5526496 agaggatttaaaatctaatctctaacattatattttgttcacgtttgttactaattttttaatcagaagatttaaagtccaatgtttaacattatttttt 5526397  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  5526396 gctcacgtttgttactaa 5526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 10726764 - 10726652
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | |||||||||||  ||||||||||||        | |||||||||||| ||||| |||  ||||| |||||    
T  10726764 agaggatttaaagtccaatctttaacaatattttttgttcacgtttgttactaatcttttttta-aggatttaaagtccaatctttactattattttttg 10726666  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  10726665 ctcacgtttgttac 10726652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 10940533 - 10940421
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | |||||||||||  ||||||||||||        | |||||||||||| ||||| |||  ||||| |||||    
T  10940533 agaggatttaaagtccaatctttaacaatattttttgttcacgtttgttactaatcttttttta-aggatttaaagtccaatctttactattattttttg 10940435  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  10940434 ctcacgtttgttac 10940421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 11974390 - 11974503
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||  ||||||||| ||||| | |||  |||||||||||||       || |||||| |||||||||| ||| |||||| |||||    
T  11974390 agaggatttaaagtccaacttttaacattatttttagctcacgtttgttactaatatttttttagtggatttgaagttcaatctttaccattattttttg 11974489  T
Q  340 ctcacgtttgttac 353  Q
     |||||||||||||    
T  11974490 ttcacgtttgttac 11974503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 12218056 - 12217944
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata--nnnnnnnagaggatttaaagttcaatcgttaacattatattt 337  Q
    ||||||||||||||| ||||||||||||| ||||||  |||| |||||||||||||         |||||||||||||| ||||  | |||| ||| |||    
T  12218056 agaggatttaaagtccaatatttaacattattttttactcatgtttgttactaatatttttttttagaggatttaaagtacaattttgaacaatattttt 12217957  T
Q  338 tgctcacgtttgt 350  Q
    |||||||||||||    
T  12217956 tgctcacgtttgt 12217944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 38002254 - 38002202
Alignment:
Q  180 tatttaatatagtgctaacaaatc-tttttctaaaatattctgagtcctaatc 231  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  38002254 tatttaatatagtgctaaaaaatcttttttctaaaatattttgagtcctaatc 38002202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 49358229 - 49358118
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| |||||| || ||||||  |||  ||||||||||||        |||||||||||||| ||||| |||||||||| |||||    
T  49358229 agaggatttaaagtccaatctttaacgttattttttcctcacgtttgttactaat--ttttttagaggatttaaagtccaatctttaacattattttttg 49358132  T
Q  340 ctcacgtttgttac 353  Q
    | ||||||||||||    
T  49358131 cccacgtttgttac 49358118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 3730053 - 3729938
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||||||| ||||||| | |||||||  || ||||||| ||| |        |||||||||||||| ||||  |||||||||| |||||    
T  3730053 agaggatttaaagtctaatctttaacaatattttttgcacacatttgttccta-tcttttattagaggatttaaagtccaatttttaacattattttttg 3729955  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||| ||||    
T  3729954 ctcacgtttgttgctaa 3729938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 11974327 - 11974443
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||| ||||||||| ||| ||||||| |  |||||| |||  |||||||||||||       |||||||||||||| |||   |||||||||| ||| |    
T  11974327 agaggctttaaagtccaatctttaacaatactttttgctcacgtttgttactaatattgttttagaggatttaaagtccaacttttaacattatttttag 11974426  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  11974427 ctcacgtttgttactaa 11974443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 12217392 - 12217341
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||| | |||||||||| ||||||||||||||||||||||    
T  12217392 aggatttaaagtccaacctttaacattattttttgctcacgtttgttactaa 12217341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 33729573 - 33729461
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    |||||||| |||||| ||||||||| ||||||| |||| ||||||||||||         ||||||||||| ||||||| |||||| ||| |||||| ||    
T  33729573 gatttaaaatctaatctttaacattattttttgctcatgtttgttactaattttttttttgaggatttaaaattcaatctttaacaatattttttgccca 33729474  T
Q  344 cgtttgttactaa 356  Q
    | ||| |||||||    
T  33729473 cttttattactaa 33729461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 13021415 - 13021300
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgc 340  Q
    ||||||||||||  |||||||||| || ||||||| |||  |||||||||||||        |||||||||||||| ||||| |||||| ||| |||| |    
T  13021415 aggatttaaagttcaatatttaaccttattttttgctcacgtttgttactaatattttttttagaggatttaaagtccaatctttaacaatattttttac 13021316  T
Q  341 tcacgtttgttactaa 356  Q
    |||| |||||||||||    
T  13021315 tcacatttgttactaa 13021300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 33729667 - 33729613
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||    
T  33729667 agaggatttaaagtccaatttttaacattattttttgctcatgtttgttactaat 33729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 44815009 - 44814894
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||||||||||| || ||| ||||||| | ||||||| ||| |||||||||||||         |||| |||||||||  |||| |||||||||| ||||    
T  44815009 agaggatttaaaatccaatctttaacaatattttttgctcacatttgttactaatcttttttttagagaatttaaagtctaatctttaacattatttttt 44814910  T
Q  339 gctcacgtttgttact 354  Q
    ||||||||||||||||    
T  44814909 gctcacgtttgttact 44814894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #67
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 407
Target Start/End: Complemental strand, 55828756 - 55828595
Alignment:
Q  245 atttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    |||||||||| ||| ||||||||| |||||||||||  ||||||||||||         ||||||||||||||   ||| |||| ||||| |||||||||    
T  55828756 atttaaagtccaatctttaacattattttttgttcaagtttgttactaatcttttttttagaggatttaaagtctcatctttaatattattttttgctca 55828657  T
Q  344 cgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
     ||||||||||||          ||| |||||||||||| ||||||||||||||||||||||||    
T  55828656 tgtttgttactaatatttttt-tagaggatttaaagtcc-aatctttaacattattttttgctc 55828595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #68
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 3730178 - 3730129
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||||||||||    
T  3730178 agaggatttaaagtccaatctttagcattattttttgctcacgtttgtta 3730129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #69
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 10726764 - 10726711
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| ||| ||||| ||||||||||||||||    
T  10726764 agaggatttaaagtccaatctttaacaatattttttgttcacgtttgttactaa 10726711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #70
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 10940533 - 10940480
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| ||| ||||| ||||||||||||||||    
T  10940533 agaggatttaaagtccaatctttaacaatattttttgttcacgtttgttactaa 10940480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #71
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 11037078 - 11037131
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| | |||| ||| ||||||||||||||||||||||    
T  11037078 agaggatttaaagtccaatcttaaacaatattttttgctcacgtttgttactaa 11037131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #72
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 11037263 - 11037316
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||  |||| |||||||||| ||||| ||||||||||||||||    
T  11037263 agaggatttaaagtctaatctttaacattattttttgttcacgtttgttactaa 11037316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #73
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 33729667 - 33729614
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||  |||||||||| ||||||||| ||||||||||||    
T  33729667 agaggatttaaagtccaatttttaacattattttttgctcatgtttgttactaa 33729614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #74
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 33729750 - 33729717
Alignment:
Q  181 atttaatatagtgctaacaaatctttttctaaaa 214  Q
    ||||||||||||||||||||||||||||||||||    
T  33729750 atttaatatagtgctaacaaatctttttctaaaa 33729717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #75
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 38002019 - 38001966
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| ||| |||||||||| |||||||||||    
T  38002019 agaggatttaaagtccaatctttaacaatattttttgctcacatttgttactaa 38001966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #76
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 54197924 - 54197969
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgttt 348  Q
    |||||||||||||||||||| ||||||| || ||||||||||||||    
T  54197924 agaggatttaaagttcaatctttaacataattttttgctcacgttt 54197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #77
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 3729928 - 3729815
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| |||| |||| ||||||| |||  ||||||| ||||        |||| ||||||||| ||||| ||| |||||| |||||    
T  3729928 agaggatttaaagtacaatctttagcattattttttgctcacgtttgttattaatccttttttagagaatttaaagtccaatctttaccattattttttg 3729829  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  3729828 ctcacgtttgttac 3729815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #78
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 44815073 - 44814956
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||| | | ||||| |||  |||||||||||||        |||||||||||| | ||||| |||||| ||| ||||    
T  44815073 agaggatttaaagtccaatctttaacaatatcttttgctcacgtttgttactaatattttttgtagaggatttaaaatccaatctttaacaatatttttt 44814974  T
Q  339 gctcacgtttgttactaa 356  Q
    |||||| |||||||||||    
T  44814973 gctcacatttgttactaa 44814956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #79
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 44815257 - 44815209
Alignment:
Q  308 atttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||  |||| |||||||||| ||||||||||||||||||||||    
T  44815257 atttaaagtcaaatctttaacattattttttgctcacgtttgttactaa 44815209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #80
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 11974222 - 11974318
Alignment:
Q  260 tttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||| ||||| | |||  |||||||||||||       |||||||||| |||  |||| |||||| ||| ||||||||||||||||||||||    
T  11974222 tttaacattatttttagctcacgtttgttactaatatttttttagaggatttatagtctaatctttaacaatattttttgctcacgtttgttactaa 11974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #81
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 54197984 - 54198034
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  54197984 agaggatttaaagtccaatctttaccactattttttgctcacgtttgttac 54198034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #82
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 10726956 - 10726911
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    |||||||||| ||||  |||||||||| ||||||||||||||||||    
T  10726956 gatttaaagtccaatatttaacattattttttgctcacgtttgtta 10726911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #83
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 10940725 - 10940680
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    |||||||||| ||||  |||||||||| ||||||||||||||||||    
T  10940725 gatttaaagtccaatatttaacattattttttgctcacgtttgtta 10940680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #84
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 11037199 - 11037252
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| |||||||||  |||| |||||| ||||||||||| ||||||||||||||    
T  11037199 agagaatttaaagtcaaatctttaacaatatattttgcttacgtttgttactaa 11037252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #85
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 11973921 - 11973970
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    ||||| |||||||| ||||| |||||| ||| ||||||||||||||||||    
T  11973921 agaggctttaaagtccaatctttaacaatattttttgctcacgtttgtta 11973970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #86
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 12218056 - 12218003
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||  |||||||||| |||| |||| ||||||||||||    
T  12218056 agaggatttaaagtccaatatttaacattattttttactcatgtttgttactaa 12218003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #87
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 13021542 - 13021493
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||| ||||| |||||||||| |||| ||| |||||||||||||    
T  13021542 gatttaaagtccaatcattaacattattttttactcgcgtttgttactaa 13021493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #88
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 44672648 - 44672697
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||  ||||| |||||| ||| ||||||||||||||||||||||    
T  44672648 gatttaaagaccaatctttaacaatattttttgctcacgtttgttactaa 44672697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #89
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 44672769 - 44672822
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||| | ||||||||  ||||||||||||    
T  44672769 agaggatttaaagtccaatctttaacattgttttttgctcttgtttgttactaa 44672822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #90
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 44672896 - 44672949
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| || || |||| ||||| |||||||||||||||| |||||    
T  44672896 agaggatttaaagtccagtctttaagattattttttgctcacgtttgtaactaa 44672949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #91
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 44815132 - 44815096
Alignment:
Q  370 agatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  44815132 agatttaaagtccaa-tctttaacattattttttgctc 44815096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #92
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 49358457 - 49358405
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||| | |||||| ||| ||||||||||||||||||||||    
T  49358457 agaggatttaaagtccaa-ctttaacaatattttttgctcacgtttgttactaa 49358405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #93
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 54197798 - 54197850
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  54197798 agagaatttaaagttcaatt-ttaacataattttttgctcacgtttgttactaa 54197850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #94
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 12218309 - 12218274
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  12218309 gatttaaagtccaa-tctttaacattattttttgctc 12218274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #95
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 13021547 - 13021500
Alignment:
Q  366 cagaagatttaaagtccaaatctttaacattattttttgctcgcctttg 414  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| ||||    
T  13021547 cagaagatttaaagtccaa-tcattaacattattttttactcgcgtttg 13021500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #96
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 49358520 - 49358468
Alignment:
Q  304 gaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||| ||||| |||||| | | |||| |||||||||||||||||    
T  49358520 gaggatttaaagtccaatctttaacaattttttttcctcacgtttgttactaa 49358468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 58)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 356
Target Start/End: Original strand, 9301375 - 9301691
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | | ||||||||||| ||||||||||    
T  9301375 acctttaaaatatatggagggatacttccttgagcaattgagtttaggaattcatgttgatataagttatgagtaaccccttcaacctcatcaaatgaca 9301474  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnn 239  Q
    ||||||||| |||||||  | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||            
T  9301475 acaaattatgttcttctcctagaaactggttgataattaatatttaatatagtgctaacaaatctatttctaaaatattttaagtactaatctttcttta 9301574  T
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    | | ||||||| ||| ||| ||||||||| ||||||| |||  |||||| |||||         |||||||||||| | ||||| |||||||||||||||    
T  9301575 a-aagatttaatgtccaatttttaacattattttttgctcacgtttgttgctaatcttttttttagaggatttaaactccaatctttaacattatatttt 9301673  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  9301674 gctcacgtttgttactaa 9301691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 356
Target Start/End: Original strand, 9305813 - 9306129
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | | ||||||||||| ||||||||||    
T  9305813 acctttaaaatatatggagggatacttccttgagcaattgagtttaggaattcatgttgatataagttatgagtaaccccttcaacctcatcaaatgaca 9305912  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnn 239  Q
    ||||||||| |||||||  | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||            
T  9305913 acaaattatgttcttctcctagaaactggttgataattaatatttaatatagtgctaacaaatctatttctaaaatattttaagtactaatctttcttta 9306012  T
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    | | ||||||| ||| ||| ||||||||| ||||||| |||  |||||| |||||         |||||||||||| | ||||| |||||||||||||||    
T  9306013 a-aagatttaatgtccaatttttaacattattttttgctcacgtttgttgctaatcttttttttagaggatttaaactccaatctttaacattatatttt 9306111  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  9306112 gctcacgtttgttactaa 9306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 292
Target Start/End: Complemental strand, 20481048 - 20480798
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||||||| ||||||| ||||  | |||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| |    
T  20481048 acctttaaaatatgtggtggaatacttctttgagtagttgagtttagaaattcttgttgatataagttatgagtatccccttcaaccttgtcaaatgata 20480949  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnn 239  Q
    ||||||||| |||||||  || ||  |||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||             
T  20480948 acaaattatgttcttctcctgaaagttgattgataaataatatttaatatagtgctaac-aatttttttctaaaatattttgagtcataat-attttttt 20480851  T
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttacta 292  Q
    ||||||||||||||| ||  ||||||||| ||||||| |||  ||||||||||    
T  20480850 agaggatttaaagtccaacctttaacattattttttgctcacgtttgttacta 20480798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 20615449 - 20615585
Alignment:
Q  42 ctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaac 141  Q
    |||||||||||||| |||||| ||||||||| || ||||||||| |||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||    
T  20615449 ctttaaaatatgtgatgggattcttccttgagcagttgagtttaaaaattcatgttgatataagttatgagtattcccttcaacctcgttaaatgacaac 20615548  T
Q  142 aaattatattcttctattggaaactgattgataatta 178  Q
    ||||||| || ||||  |||||||| |||||||||||    
T  20615549 aaattatgttattctcctggaaactaattgataatta 20615585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 20654153 - 20654291
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||| |||||  ||||||| | || ||||||||| |||||||||||||||||||||||||| ||  ||||||||||||| ||||||||    
T  20654153 acctttaaaatatgtgatgggaatcttcctttagcagttgagtttaaaaattcatgttgatataagttatgagtattcccttcaacctcgttaaatgaca 20654252  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || ||||  |||||||| |||||||||||    
T  20654253 acaaattatgttattctcctggaaactaattgataatta 20654291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 294
Target Start/End: Original strand, 10271430 - 10271549
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc-nnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||         ||||||||||||||| ||| ||||||||| |||||    
T  10271430 ttaatatttaatatagtgctaacaaatctttttctaaaatattttgagtcctgatcttttcttctagaggatttaaagtccaatctttaacattattttt 10271529  T
Q  275 tgttcatatttgttactaat 294  Q
    || ||| |||||||||||||    
T  10271530 tgctcacatttgttactaat 10271549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 9330034 - 9329921
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||||||||||||| |||||| ||||  |||||||||||||       |||||||||||||||||||| ||| |||||| |||||    
T  9330034 agaggatttaaagtccaatatttaacattatttttttttcacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttg 9329935  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||| ||||    
T  9329934 ctcacgtttattac 9329921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 20618017 - 20618132
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||        |||||||||||||| ||||| |||||| ||| |||||    
T  20618017 agaggatttaaagtccaatctttaacattattttttgctcatgtttgttactaat-tttttttagaggatttaaagtccaatctttaacaatattttttg 20618115  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  20618116 ctcacgtttgttactaa 20618132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 47221500 - 47221396
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa-nnnnnnnnccagaagatttaaagtccaaatctttaacattatttt 401  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||          ||||||||||||||| | ||||||||||||||||||    
T  47221500 agaggatttaaagttcaatctttaacattatattttgctcacgtttgttgctaatcttttttttcagaagatttaaagttc-aatctttaacattatttt 47221402  T
Q  402 ttgctc 407  Q
    ||||||    
T  47221401 ttgctc 47221396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 47222265 - 47222209
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  47222265 attaatatttaatatagtgctaacaaatatttttctaaaatattttgagtcctaatc 47222209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 9330355 - 9330239
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||||| | ||||| |||  |||||||||||||       |||||||||||||| ||||| |||||||||  |||||    
T  9330355 agaggatttaaagtacaatctttaacattatattttgctcacgtttgttactaatattttttgagaggatttaaagtccaatctttaacattagtttttg 9330256  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  9330255 ctcacgtttgttactaa 9330239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 407
Target Start/End: Complemental strand, 47222130 - 47222033
Alignment:
Q  308 atttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||||||||||||||||||||    
T  47222130 atttaaagtccaatctttaacattatattttgctcacgtttgttactaatatttttta-agaagatttaaagtccaa-tctttaacattattttttgctc 47222033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 25800304 - 25800366
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||| |||||||||    
T  25800304 acctttaaaatatgtggtgggatacttccttgagaaattgagtttaggaattcctgttgatat 25800366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 35493711 - 35493649
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  35493711 acctttaaaatatatggtgggatacttccttgagcaattgagtttaagaattcatgttgatat 35493649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 356
Target Start/End: Original strand, 20616495 - 20616677
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtccta-atcnnnnnnnnagaggatttaaagtctaatatttaacattgtttt 273  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |          ||||||||||||||| ||   |||||||| ||||    
T  20616495 attaatatttattatagtgctaacaaaactttttctaaaatattttgagtcctataatatttttttagaggatttaaagtccaaacattaacattatttt 20616594  T
Q  274 ttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||| |||  ||||||| |||||       | | ||||||||||  |||| ||||||||||||||||  |||||||||||||||    
T  20616595 ttgctcacgtttgttattaatatttttttacaagatttaaagtataatctttaacattatattttgtccacgtttgttactaa 20616677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 9301798 - 9301915
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnna-gaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||||||||||| |  ||| ||||||||| |||||||||||| |||||||||||||       | |||||||| |||| ||||| |||| ||||| ||||    
T  9301798 agaggatttaaacttcaatctttaacattattttttgttcatgtttgttactaatatttttttaagaggatttgaagtccaatctttaatattatttttt 9301897  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  9301898 gctcacgtttgttactaa 9301915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 9306236 - 9306353
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnna-gaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||||||||||| |  ||| ||||||||| |||||||||||| |||||||||||||       | |||||||| |||| ||||| |||| ||||| ||||    
T  9306236 agaggatttaaacttcaatctttaacattattttttgttcatgtttgttactaatatttttttaagaggatttgaagtccaatctttaatattatttttt 9306335  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  9306336 gctcacgtttgttactaa 9306353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 20480496 - 20480380
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||||||| ||||||||||||||       ||||||||||||||  | |  |||| ||||| |||||    
T  20480496 agaggatttaaagtccaatctttaacaatattttttgttcacatttgttactaatattttcttagaggatttaaagtctattatttaatattattttttg 20480397  T
Q  340 ctcacgtttgttactaa 356  Q
    || ||||||||||||||    
T  20480396 ctgacgtttgttactaa 20480380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 20618079 - 20618195
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||  ||||||||||||        ||| |||||||||| ||||| |||||| ||| |||||    
T  20618079 agaggatttaaagtccaatctttaacaatattttttgctcacgtttgttactaatctttttttagatgatttaaagtccaatcattaacaatattttttg 20618178  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  20618179 ctcacgtttgttactaa 20618195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 356
Target Start/End: Original strand, 20617963 - 20618070
Alignment:
Q  249 aaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgttt 348  Q
    |||||| ||| ||||||||| ||||||  |||  |||||||||||||       |||||||||||||| ||||| |||||||||| ||||||||| ||||    
T  20617963 aaagtccaatctttaacattatttttttctcacgtttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttgctcatgttt 20618062  T
Q  349 gttactaa 356  Q
    ||||||||    
T  20618063 gttactaa 20618070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 47222130 - 47222019
Alignment:
Q  245 atttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcac 344  Q
    |||||||||| ||| ||||||||| | ||||| |||  |||||||||||||       ||| |||||||||| ||||| |||||||||| ||||||||||    
T  47222130 atttaaagtccaatctttaacattatattttgctcacgtttgttactaatattttttaagaagatttaaagtccaatctttaacattattttttgctcac 47222031  T
Q  345 gtttgttactaa 356  Q
    ||||| ||||||    
T  47222030 gtttggtactaa 47222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 19373430 - 19373483
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  19373430 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaa 19373483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 20480560 - 20480507
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  20480560 agaggatttaaagttaaatctttaacattattttttgctcacgtttgttactaa 20480507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 20657396 - 20657509
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgct 341  Q
    ||||||||||||| ||| ||||||||| ||||||| ||||  |||||||||||        |||||||||||||| ||||  |||||| ||| |||||||    
T  20657396 aggatttaaagtccaatctttaacattattttttgctcatgcttgttactaat-tttttttagaggatttaaagtccaattattaacactattttttgct 20657494  T
Q  342 cacgtttgttactaa 356  Q
    |||||||||||||||    
T  20657495 cacgtttgttactaa 20657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 10271691 - 10271794
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    ||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||          ||| |||||||||||| ||||||||| |||||||||    
T  10271691 agaggatataaagtccaatctttaacattattttttgctcacgtttgttactaatattttttttagaggatttaaagtcc-aatctttaatattattttt 10271789  T
Q  403 tgctc 407  Q
    |||||    
T  10271790 tgctc 10271794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 20657267 - 20657384
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||         | | |||||||||| ||||| |||||||||  ||||    
T  20657267 agaggatttaaagtctaatctttaacattatattttgttcatgtttgttactaatctttttatcataagatttaaagtccaatctttaacattacttttt 20657366  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||| ||||    
T  20657367 gctcacgtttgttcctaa 20657384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 25801316 - 25801400
Alignment:
Q  272 ttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||| ||| ||||||||||||||       |||||||||||||| ||||||| ||||| || ||||||||||||||||||||||    
T  25801316 ttttgctcacatttgttactaatatttttttagaggatttaaagtccaatcgtgaacatgattttttgctcacgtttgttactaa 25801400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 11320724 - 11320830
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||| |||||||||| ||| ||||||||| ||||||| ||| |||||||||||||        |||||||||||||| ||||| |||||| ||| |||||    
T  11320724 agagaatttaaagtccaatctttaacattattttttgctcacatttgttactaat-tttttttagaggatttaaagtccaatctttaacaatattttttg 11320822  T
Q  340 ctcacgtt 347  Q
    ||||||||    
T  11320823 ctcacgtt 11320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 10271495 - 10271548
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| |||||||||| |||||||||||    
T  10271495 agaggatttaaagtccaatctttaacattattttttgctcacatttgttactaa 10271548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 407
Target Start/End: Original strand, 10271565 - 10271730
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacatta-tattttgc 340  Q
    ||||||||||||| ||| ||||| | | ||||||| |||  |||||||||||||       |||||||||||||| ||||| ||||||||| | ||||||    
T  10271565 aggatttaaagtccaatctttaataatattttttgctcacgtttgttactaatatttatttagaggatttaaagtccaatctttaacattatttttttgc 10271664  T
Q  341 tcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||| ||||| ||||||          ||| ||| |||||||| ||||||||||||||||||||||||    
T  10271665 tcatgtttgatactaatcttttttttagaggatataaagtcc-aatctttaacattattttttgctc 10271730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 10271691 - 10271805
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||| ||||||| ||| ||||||||| ||||||| |||  |||||||||||||        |||||||||||||| ||||| |||| ||||| ||||    
T  10271691 agaggatataaagtccaatctttaacattattttttgctcacgtttgttactaatattttttttagaggatttaaagtccaatctttaatattatttttt 10271790  T
Q  339 gctcacgtttgttac 353  Q
    ||||| |||||||||    
T  10271791 gctcatgtttgttac 10271805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 11320856 - 11320905
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  11320856 agaggatttaaagtccaatctttaacattattttttgctcacgtttgtta 11320905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 47221431 - 47221386
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||    
T  47221431 gatttaaagttcaatctttaacattattttttgctcacgtttgtta 47221386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 9330229 - 9330112
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgtttttt-gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||| |||||||||| ||| ||||||||| |||||| | |||  |||||||||||||       |||||||||||||| ||||| |||| ||||| ||||    
T  9330229 agagtatttaaagtccaatctttaacattatttttttgctcacgtttgttactaatatttttttagaggatttaaagtccaatctttaaaattatttttt 9330130  T
Q  339 gctcacgtttgttactaa 356  Q
    |||||| ||| |||||||    
T  9330129 gctcacatttattactaa 9330112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 11320664 - 11320763
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgct 406  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||| ||          |||  ||||||||||| |||||||||||||||||||||||    
T  11320664 gatttaaagttcaatctttaacaatattttttgctcacgtttgttaccaatcttttttttagagaatttaaagtcc-aatctttaacattattttttgct 11320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 20480850 - 20480798
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    |||||||||||||| ||| | |||||||||| |||||||||||||||||||||    
T  20480850 agaggatttaaagtccaacctttaacattattttttgctcacgtttgttacta 20480798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 20655184 - 20655239
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaat 230  Q
    ||||||||||| | ||||||||||||| | |||||||||||||| |||||||||||    
T  20655184 attaatatttattttagtgctaacaaaacattttctaaaatattttgagtcctaat 20655239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 25801150 - 25801201
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||| ||||    
T  25801150 aggatttaaagtccaatctttaacgttatattttgctcacgtttgttgctaa 25801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 11320724 - 11320777
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||| ||||| |||||||||| |||||||||| |||||||||||    
T  11320724 agagaatttaaagtccaatctttaacattattttttgctcacatttgttactaa 11320777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 19373299 - 19373352
Alignment:
Q  303 agaggatttaaagttcaatcgtt-aacattatattttgctcacgtttgttacta 355  Q
    |||||||||||||||||||| || |||||||| |||| ||||||||||||||||    
T  19373299 agaggatttaaagttcaatcttttaacattattttttactcacgtttgttacta 19373352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 39678240 - 39678187
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||| ||| |||||||||| |||||||||  |||||||||||    
T  39678240 agaggatttaaagttcgatctttaacattattttttgctcaaatttgttactaa 39678187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 41755027 - 41755076
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||| |||| |||||||||| ||||| ||||||||||||||||    
T  41755027 gatttaaagtttaatctttaacattattttttgttcacgtttgttactaa 41755076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 41755027 - 41755136
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    |||||||||| |||| ||||||||| |||||||||||  ||||||||||||        |||| |||||||||  |||| |||||| ||| ||||||||     
T  41755027 gatttaaagtttaatctttaacattattttttgttcacgtttgttactaatttgtttttagagtatttaaagtctaatctttaacaatattttttgctcg 41755126  T
Q  344 cgtttgttac 353  Q
     |||||||||    
T  41755127 tgtttgttac 41755136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 9330096 - 9330045
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||| ||| ||||| |||||| ||| ||||||||||||||||||||||    
T  9330096 aggatttatagtccaatctttaacaatattttttgctcacgtttgttactaa 9330045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 20617963 - 20618056
Alignment:
Q  312 aaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||| ||||| |||||||||| |||| |||||||||||||||||          ||| |||||||||||||| ||||||||||||||||||||||    
T  20617963 aaagtccaatctttaacattatttttttctcacgtttgttactaatattttttt-agaggatttaaagtccaa-tctttaacattattttttgctc 20618056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 9330096 - 9329981
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgc 340  Q
    |||||||| |||| ||| ||||||| | ||||||| |||  |||||||||||||        |||||||||||||| ||||  |||||||||| ||||      
T  9330096 aggatttatagtccaatctttaacaatattttttgctcacgtttgttactaatattttttgtagaggatttaaagtccaatatttaacattatttttttt 9329997  T
Q  341 tcacgtttgttactaa 356  Q
    ||||||||||||||||    
T  9329996 tcacgtttgttactaa 9329981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 11320982 - 11321032
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||| |||||||||  |||| ||||||||||||||    
T  11320982 agaggatttaaagtccaatctttaacattacctttttctcacgtttgttac 11321032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 19373430 - 19373484
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||| ||||||||||||    
T  19373430 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaat 19373484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 19373636 - 19373690
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    |||||||||||| || ||| |||||||||  ||||||||||| ||||||||||||    
T  19373636 agaggatttaaattccaatctttaacattagtttttgttcatgtttgttactaat 19373690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 20480705 - 20480652
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||| ||||| |||||||||| ||||||  ||||||||||||||    
T  20480705 agagtatttaaagtccaatctttaacattattttttgcctacgtttgttactaa 20480652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 35492565 - 35492512
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||||| |||| ||| |||||||    
T  35492565 agaggatttaaagtccaatctttaacattattttttggtcacttttattactaa 35492512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 10271499 - 10271534
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  10271499 gatttaaagtccaa-tctttaacattattttttgctc 10271534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 11320598 - 11320650
Alignment:
Q  180 tatttaatatagtgctaacaaatctttttctaaaata-ttctgagtcctaatc 231  Q
    |||||||||||||| ||||||||||| |||||||| | || ||||||||||||    
T  11320598 tatttaatatagtgataacaaatcttcttctaaaaaatttttgagtcctaatc 11320650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 11320856 - 11320895
Alignment:
Q  367 agaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||| |||||||||||||| ||||||||||||||||||||||    
T  11320856 agaggatttaaagtccaa-tctttaacattattttttgctc 11320895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 20657212 - 20657256
Alignment:
Q  312 aaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||| ||||| |||||||||| |||||||||||||| |||||||    
T  20657212 aaagtccaatcattaacattattttttgctcacgtttattactaa 20657256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 20657398 - 20657433
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20657398 gatttaaagtccaa-tctttaacattattttttgctc 20657433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 35492800 - 35492768
Alignment:
Q  324 ttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||| ||||||||||||||||||||||    
T  35492800 ttaacattattttttgctcacgtttgttactaa 35492768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 39678174 - 39678126
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttac 290  Q
    ||||||||||||||||| |||||| || ||||||| |||| ||||||||    
T  39678174 aggatttaaagtctaatctttaaccttattttttgctcatgtttgttac 39678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 54)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 40 - 230
Target Start/End: Original strand, 25047071 - 25047260
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  25047071 acctttaaaatatgtggtggga-acttccttgagcaattgagtttaggaattcatgttgaaataagttatgagtatccccttcaacctcgtcaaatgaca 25047169  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaat 230  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||   || ||||||||||||||| |||||||||||    
T  25047170 acaaattatgttcttctcttggaaactgattgataattattatttaatatagtgctaattcatatttttctaaaatattttgagtcctaat 25047260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 175 - 403
Target Start/End: Original strand, 44972195 - 44972423
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||        ||||||||||||||| ||| ||||||||| |||||    
T  44972195 attaatatttaatatagtgctagcaaatctttttctaaaatattttgagtcctaatc-tttttttagaggatttaaagtccaatctttaacattattttt 44972293  T
Q  275 tgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa--nnnnnnnnccagaaga 372  Q
    |  |||  ||||||||||||        |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||          ||||| ||    
T  44972294 taatcaagtttgttactaatctttttttagaggatttaaagtccaatctttaacattacattttgctcatgtttgttactaatcttttttttccagagga 44972393  T
Q  373 tttaaagtccaaatctttaacattatttttt 403  Q
    |||||||||| ||||||||||||||||||||    
T  44972394 tttaaagtcc-aatctttaacattatttttt 44972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 27340556 - 27340423
Alignment:
Q  44 ttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaa 143  Q
    |||||||||||||||| ||  |||||||| ||||||||||||  ||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  27340556 ttaaaatatgtggtgg-atctttccttgagcaattgagtttaagaattcctgttgatataagttatgagtatcccctacaacctcgtcaaatgacaacaa 27340458  T
Q  144 attatattcttctattggaaactgattgataatta 178  Q
    ||||| ||||||| ||| |||| ||||||||||||    
T  27340457 attatgttcttctcttgaaaaccgattgataatta 27340423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 7062483 - 7062305
Alignment:
Q  177 taatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttg 276  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||| ||| ||||||||| |||||||    
T  7062483 taatatttaatatagtgctaacaaatctttttctaaaatattttgagtcctaatc-tttttttagaggatttaaagtccaatttttaacattattttttg 7062385  T
Q  277 ttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
     |||  ||| ||| |||||       | | |||||||||| ||||| |||||||||| ||||||||||||||||| ||||    
T  7062384 ctcacgtttattattaatattttttcaaaagatttaaagtccaatctttaacattattttttgctcacgtttgtttctaa 7062305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 175 - 404
Target Start/End: Original strand, 35192627 - 35192853
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||        |||||||||||| || ||| ||||||||| |||||    
T  35192627 attattatttaatatagtgctaacaaatctctttctaaaatgttttgagtcctaatc-tttttttagaggatttaaattc-aatctttaacattattttt 35192724  T
Q  275 tgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatt 374  Q
    || |||  |||||||||| |        |||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||        | || |||||    
T  35192725 tgctcacgtttgttactattctttttttagaggattaaaagtccaatctttaacattatattttgctcacgtttgtcactaatcttttttctaggagatt 35192824  T
Q  375 taaagtccaaatctttaacattattttttg 404  Q
    |||||||| ||| |||||||||||||||||    
T  35192825 taaagtcc-aatatttaacattattttttg 35192853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 44539043 - 44539159
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | |||||||||||  |||||||||||||       |||||||||||||| |||||  ||||||||| |||||    
T  44539043 agaggatttaaagtccaatctttaacaatattttttgttcacgtttgttactaatatttttttagaggatttaaagtccaatcagtaacattattttttg 44539142  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  44539143 ctcacgtttgttactaa 44539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 310395 - 310166
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||        ||| ||| ||||||||||  ||||||| | ||||||    
T  310395 ttaatgtttaatatagtgctaacaaatcttcttctaaaatattttgagtcctaatc-tttttttagatgatataaagtctaacctttaacaatatttttt 310297  T
Q  276 gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagattt 375  Q
    | |||   |||||||||||        |||| ||||||||| ||||| |||||||||| ||||| |||||||| |||||||          ||| |||||    
T  310296 gctcacgcttgttactaatttttttttagagaatttaaagtccaatctttaacattattttttgatcacgtttattactaatattttttttagaggattt 310197  T
Q  376 aaagtccaaatctttaacattattttttgctc 407  Q
    ||||||| |||||||||||||| |||||||||    
T  310196 aaagtcc-aatctttaacattaatttttgctc 310166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 27339890 - 27339777
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||||||| ||||||||| ||||||  |||  |||||||||||||       |||||||||||||||||||| ||| |||||| |||||    
T  27339890 agaggatttaaagtctaatttttaacattattttttactcacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttg 27339791  T
Q  340 ctcacgtttgttac 353  Q
    |||| |||||||||    
T  27339790 ctcaagtttgttac 27339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 43529014 - 43528933
Alignment:
Q  73 acaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattctt 154  Q
    |||||||||||||| ||||  |||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  43529014 acaattgagtttaggaatttctgttaatataagttatgagtatccccttcaacctcatcaaatgacaacaaattatgttctt 43528933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 27340080 - 27339964
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  ||||| ||||||         ||| ||||||||||||||| |||||||||| |||||    
T  27340080 agaggatttaaagtccaatttttaacattattttttgctcacgtttgtaactaatcttttttttgagtatttaaagttcaatctttaacattattttttg 27339981  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  27339980 ctcacgtttgttactaa 27339964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 403
Target Start/End: Original strand, 25047271 - 25047368
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattatttttt 403  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||         ||||||||||||| ||| ||| ||||||||||||||||    
T  25047271 aggatttaaagttcaatctttaacattatattttgcttacgtttgttactaatctttttttcagaagatttaaaatcc-aatatttaacattatttttt 25047368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 44972707 - 44972818
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgct 341  Q
    ||||||||||||| |||||||||||||  |||||| |||  |||||||||||||       ||||||||||||||||| || ||| |||||  |||||||    
T  44972707 aggatttaaagtcaaatatttaacattaatttttgctcacgtttgttactaatatttttttagaggatttaaagttcagtctttaccattactttttgct 44972806  T
Q  342 cacgtttgttac 353  Q
    ||||||||||||    
T  44972807 cacgtttgttac 44972818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 356
Target Start/End: Original strand, 19901346 - 19901520
Alignment:
Q  183 ttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgttcata 282  Q
    ||||||||| |||||||||||||||||||||||| | |||||| |||||        ||| | ||||||||| ||| |||| |||| ||||||| |||      
T  19901346 ttaatatagagctaacaaatctttttctaaaatactttgagtcataatcttttttttagatgctttaaagtccaatctttagcattattttttgctcacg 19901445  T
Q  283 tttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||        |||||||||||||| ||||| ||||||  ||  |||||||||||||||||||||    
T  19901446 tttgttactaatattttttttagaggatttaaagtccaatctttaacaacattatttgctcacgtttgttactaa 19901520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 19900271 - 19900347
Alignment:
Q  102 taagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||||||  ||||||  ||||||||||||||||||||    
T  19900271 taagttatgagtatccccttcaacctcgtcacacgacaacaaattatcatcttcttatggaaactgattgataatta 19900347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 21956744 - 21956631
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| | |  |||||||||| |        |||||||||||||| ||||| |||||||||| |||||    
T  21956744 agaggatttaaagtccaatctttaacattattttttgctaaagtttgttactagtctttttttagaggatttaaagtccaatctttaacattattttttg 21956645  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  21956644 ctcacgtttgttac 21956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 40633742 - 40633837
Alignment:
Q  181 atttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttg 276  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| |||||        |||||||||| |||| ||| ||||||||| |||||||    
T  40633742 atttattatagtgctaacaaatctttttctaaaatattttgagtcataatcttttttctagaggatttatagtccaatctttaacattattttttg 40633837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 21962763 - 21962648
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |  |||||||||| |        |||||||||||||| ||||| |||||||||| |||||    
T  21962763 agaggatttaaagtccaatctttaacattattttttgttaaagtttgttactagtctttttttagaggatttaaagtccaatctttaacattattttttg 21962664  T
Q  340 ctcacgtttgttacta 355  Q
    || | |||||||||||    
T  21962663 ctaaagtttgttacta 21962648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 44972452 - 44972566
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||  |||  ||| ||||||||        |||||||||||||| |||||  |||||||||||||||    
T  44972452 agaggatttaaagtccaatctttaacattatttttttctcacgtttattactaat-tttttttagaggatttaaagtccaatctataacattatattttg 44972550  T
Q  340 ctcacgtttgttacta 355  Q
    ||||||||||||||||    
T  44972551 ctcacgtttgttacta 44972566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 407
Target Start/End: Complemental strand, 27340137 - 27340041
Alignment:
Q  310 ttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||          ||| |||||||||||| ||| ||||||||||||||||||||    
T  27340137 ttaaagttcaatctttaacattattttttgctcacgtttgttactaatctatcttttagaggatttaaagtcc-aatttttaacattattttttgctc 27340041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 7062296 - 7062183
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||| ||| ||||||    |  |||||||||||||       |||||||||||||||||||| ||| |||||| |||||    
T  7062296 agaggatttaaagtccaatctttaatattattttttccctacgtttgttactaatatttttttagaggatttaaagttcaatctttaccattattttttg 7062197  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  7062196 ctcacgtttgttac 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 35193068 - 35193176
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    ||||||||||  ||| ||||||||| ||||||| |||  ||||||||||||        |||||||||||||||||||| ||| |||||| |||||||||    
T  35193068 gatttaaagttcaatctttaacattattttttggtcacgtttgttactaat-ttcttttagaggatttaaagttcaatctttaccattattttttgctca 35193166  T
Q  344 cgtttgttac 353  Q
    ||||||||||    
T  35193167 cgtttgttac 35193176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 43528878 - 43528766
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||| | ||||||| ||| ||||||||||||||       |||||||||||| | ||||| |||||||||| |||||    
T  43528878 agaggatttaaagttcaatctttaacaatattttttgctca-atttgttactaatatttttttagaggatttaaaatccaatctttaacattattttttg 43528780  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||| ||||    
T  43528779 ctcacgtttattac 43528766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 44972388 - 44972505
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| ||||||  |||  |||||||||||||        |||||||||||||| ||||| |||||||||| ||||    
T  44972388 agaggatttaaagtccaatctttaacattattttttactcacgtttgttactaataatttttttagaggatttaaagtccaatctttaacattatttttt 44972487  T
Q  339 gctcacgtttgttactaa 356  Q
     ||||||||| |||||||    
T  44972488 tctcacgtttattactaa 44972505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 44972388 - 44972487
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||| |||||||||| |||| |||||||||||||||||          ||| |||||||||||| |||||||||||||||||||    
T  44972388 agaggatttaaagtccaatctttaacattattttttactcacgtttgttactaataatttttttagaggatttaaagtcc-aatctttaacattattttt 44972486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 13595101 - 13595050
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  13595101 aggatttaaagtccaatctttaacattattttttgctcacgtttgttactaa 13595050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 310269 - 310154
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||| |||||||||| ||| ||||||||| ||||||| |||  ||| |||||||||        |||||||||||||| ||||| |||||||||  ||||    
T  310269 agagaatttaaagtccaatctttaacattattttttgatcacgtttattactaatattttttttagaggatttaaagtccaatctttaacattaattttt 310170  T
Q  339 gctcacgtttgttact 354  Q
    ||||||||||||||||    
T  310169 gctcacgtttgttact 310154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 13595800 - 13595853
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||| |||||||    
T  13595800 agaggatttaaagttcaatctttaacagtattttttgctcacgtttattactaa 13595853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 35192821 - 35192933
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaac---attatattttg 339  Q
    ||||||||||| ||||||||||||| ||||||||| || |||||||||||||        |||| ||||||||| ||||| |||||   ||||| |||||    
T  35192821 gatttaaagtccaatatttaacattattttttgtttatgtttgttactaatattttttttagagtatttaaagtccaatctttaacattattattttttg 35192920  T
Q  340 ctcacgtttgtta 352  Q
    |||||||||||||    
T  35192921 ctcacgtttgtta 35192933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 35193068 - 35193117
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  35193068 gatttaaagttcaatctttaacattattttttggtcacgtttgttactaa 35193117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 7062421 - 7062319
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||| ||| |||        | | |||||||||||||||| |||||||||||||||||    
T  7062421 agaggatttaaagtccaatttttaacattattttttgctcacgtttattattaatattttttcaa-aagatttaaagtccaa-tctttaacattattttt 7062324  T
Q  403 tgctc 407  Q
    |||||    
T  7062323 tgctc 7062319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 310141 - 310086
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata 295  Q
    ||||||||||||||||||| ||||||| | |||||||||||  |||||||||||||    
T  310141 agaggatttaaagtctaatctttaacaatattttttgttcacgtttgttactaata 310086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 13595864 - 13595915
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||||| |||||| ||| ||||||||||||||||||||||    
T  13595864 aggatttaaagtccaatctttaacaatattttttgctcacgtttgttactaa 13595915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 27340260 - 27340217
Alignment:
Q  309 tttaaagttcaatcgttaacattatattttgctcacgtttgtta 352  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  27340260 tttaaagtttaatctttaacattatattttgctcacgtttgtta 27340217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 44539106 - 44539222
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| |||   ||||||| ||||||| |||  ||||||||||||        |||||||||||||| |||||  ||||| ||| |||||    
T  44539106 agaggatttaaagtccaatcagtaacattattttttgctcacgtttgttactaatctttttttagaggatttaaagtccaatcagtaacactattttttg 44539205  T
Q  340 ctcacgtttgttactaa 356  Q
    ||||| |||||||||||    
T  44539206 ctcacatttgttactaa 44539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 44972643 - 44972694
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||||| |||||| ||| ||||||||||||||||||||||    
T  44972643 aggatttaaagtccaatctttaacaatattttttgctcacgtttgttactaa 44972694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 35191384 - 35191430
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttag 86  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  35191384 acctttaaactatatggtgggatacttccttgagcaattgagtttag 35191430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 25047462 - 25047515
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| | ||||| |||||||||| ||||| ||||||||||||||||    
T  25047462 agaggatttaaaatgcaatctttaacattattttttgttcacgtttgttactaa 25047515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 27339953 - 27339900
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||| ||||||| |||| |||| ||||| ||||||||||||||||||||||    
T  27339953 agaggatataaagttgaatctttaatattattttttgctcacgtttgttactaa 27339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 310205 - 310088
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| |||||||||  |||||| |||  ||||||||| |||        ||||||||||||||  |||| |||||| ||| ||||    
T  310205 agaggatttaaagtccaatctttaacattaatttttgctcacgtttgttacttatattttttttagaggatttaaagtctaatctttaacaatatttttt 310106  T
Q  339 gctcacgtttgttactaa 356  Q
    | ||||||||||||||||    
T  310105 gttcacgtttgttactaa 310088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 13594942 - 13594830
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||||||||||| || ||||||||||||  ||||||| |||  ||||||||||||        |  ||||||||||| ||||| ||| |||||| |||||    
T  13594942 agaggatttaaaatccaatatttaacatgattttttgctcacgtttgttactaat-ttattttattggatttaaagtccaatctttaccattattttttg 13594844  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  13594843 ctcacgtttgttac 13594830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 21956744 - 21956692
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    |||||||||||||| ||||| |||||||||| ||||||| | |||||||||||    
T  21956744 agaggatttaaagtccaatctttaacattattttttgctaaagtttgttacta 21956692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 19900233 - 19900276
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtt 83  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||    
T  19900233 acctttaaaatatgtggtaggatacttccttgagcaattaagtt 19900276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 27339953 - 27339837
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||| ||||||  ||| ||||| ||| ||||||| |||  ||||||||||||        ||||||||||||||  |||  |||||||||| ||||     
T  27339953 agaggatataaagttgaatctttaatattattttttgctcacgtttgttactaatctttttttagaggatttaaagtctaatttttaacattatttttta 27339854  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  27339853 ctcacgtttgttactaa 27339837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 34757152 - 34757202
Alignment:
Q  180 tatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||    
T  34757152 tatttaatata-tgctaacaaatctttttttaaaatattttgagtccaaatc 34757202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 44972514 - 44972630
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| | ||||||| | ||||| |||  |||||||||| ||       |||||||||  ||| ||||| |||||| ||| |||||    
T  44972514 agaggatttaaagtccaatctataacattatattttgctcacgtttgttactagtatttttttagaggatttttagtccaatctttaacaatattttttg 44972613  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  44972614 ctcaagtttgttactaa 44972630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 13594942 - 13594889
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| | ||||  ||||||| || ||||||||||||||||||||||    
T  13594942 agaggatttaaaatccaatatttaacatgattttttgctcacgtttgttactaa 13594889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 13595740 - 13595792
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| |||| ||| |||||||||||||    
T  13595740 agaggatttaaagt-caatctttaacattatttttttctcgcgtttgttactaa 13595792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 35192946 - 35192999
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| | ||||| ||||||| || |||| |||||||||||||||||    
T  35192946 agaggatttaaaatccaatctttaacatgattttttcctcacgtttgttactaa 35192999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 44538981 - 44539034
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||| ||||||||||| |||||||||| || || ||||||||||||||||    
T  44538981 agagaattcaaagttcaatctttaacattattttctgatcacgtttgttactaa 44539034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 13595101 - 13595049
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||    
T  13595101 aggatttaaagtccaatctttaacattattttttgctcacgtttgttactaat 13595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 13595099 - 13595064
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13595099 gatttaaagtccaa-tctttaacattattttttgctc 13595064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 21956677 - 21956642
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21956677 gatttaaagtccaa-tctttaacattattttttgctc 21956642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 40633857 - 40633905
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgtt 288  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||||||||||    
T  40633857 agaggatttaaagtagaatctttaacattattttttgctcatatttgtt 40633905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 44538851 - 44538903
Alignment:
Q  304 gaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||| ||||  |||| ||||| ||||||| ||||||||||||||    
T  44538851 gaggatttaaagtccaatttttaaaattattttttgcttacgtttgttactaa 44538903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 16307399 - 16307221
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||| |||| ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||| |    
T  16307399 acctttaaaatatatggtcggatacttccttgagaaattgagtttaggaattcttgttgatataagttatgagtatccccttcaacctcgtcaaatgaga 16307300  T
Q  140 acaaattatattcttctattggaaactgattgataattaatatttaatatagtgctaacaaatctttttctaaaatatt 218  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  16307299 acaaattatgttcttctcttgaaaactgattgataattaatatttaatatagtcctaacatatctttttctaaaatatt 16307221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 19708457 - 19708595
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||| ||| |||||||| |||| ||||||||    
T  19708457 acctttaaaatatgtggtgggatacttccttgagcagttgagtttataaattcctgttgatataaattatgagtatccccttcaacgtcgttaaatgaca 19708556  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || ||||  || ||| | |||||||||||    
T  19708557 acaaattatgttattctcctgaaaaataattgataatta 19708595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 17589043 - 17589179
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||  |||||||||||||||||||  |||| ||| ||||||||||||||||||||||    
T  17589043 acctttaaaaaatatggtgggatacttccttgagcaattgagtttaagaattcatgttgatataagt--tgagtatccccttcaacctcgtcaaatgaca 17589140  T
Q  140 acaaattatattcttctattggaaactgattgataattaa 179  Q
    ||||| ||| |||||||  ||||||| || ||||||||||    
T  17589141 acaaagtatgttcttctcctggaaaccga-tgataattaa 17589179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 356
Target Start/End: Original strand, 27900502 - 27900681
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||        ||| ||||||||||||||| ||||||| | ||||||    
T  27900502 ttaatgtttaatatagtgctaacgaatctttttctaaaatattttgagtcctaatctttttgttagatgatttaaagtctaatctttaacaatatttttt 27900601  T
Q  276 gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    | |||  |||||||||||||       |||||||||||||| ||||  |||||||||| || |||||| ||||||||||||    
T  27900602 gctcacgtttgttactaatattttttcagaggatttaaagtccaat-tttaacattattttctgctcatgtttgttactaa 27900681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 355
Target Start/End: Original strand, 19709215 - 19709388
Alignment:
Q  182 tttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgttcat 281  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||        ||||||||||||||| ||||||||||||| | ||||| ||||    
T  19709215 tttaatatagtgctaacaaatttttttctaaaatattttgagtcctaatc-tttttttagaggatttaaagtccaatatttaacattatattttgctcat 19709313  T
Q  282 atttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
     ||||||||||||         | | |||||||||||||||| | |||||||| |||||| ||||||||||||||    
T  19709314 gtttgttactaatctatttatcaaaagatttaaagttcaatcttaaacattattttttgcgcacgtttgttacta 19709388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 10928388 - 10928272
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||       |||||||||||||||||||| |||||||||| |||||    
T  10928388 agaggatttaaagtccaatctttaacaatattttttgctcatgtttgttactaatatttttttagaggatttaaagttcaatctttaacattattttttg 10928289  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  10928288 ctcatgtttgttactaa 10928272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 14894857 - 14894744
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||| ||||||||||||        |||||||||||||| ||||| ||||||| || |||||    
T  14894857 agaggatataaagtctaatcttttacatttttttttgttcatgtttgttactaatttttttttagaggatttaaagtccaatctttaacatcattttttg 14894758  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  14894757 ctcacgtttgttac 14894744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 16306450 - 16306281
Alignment:
Q  240 agaggatttaaagtctaatatttaacattg-ttttttgttcatatttgttactaatannnnnnn--agaggatttaaagttcaatcgttaacattatatt 336  Q
    ||||||||||||||| ||| ||||| |||  |||||||||||  |||||||||||||         |||||||||||||| ||||| |||||||||||||    
T  16306450 agaggatttaaagtccaatctttaatatttattttttgttcacgtttgttactaatatttttttttagaggatttaaagtccaatctttaacattatatt 16306351  T
Q  337 ttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||||||||         |||||||||||| |||| ||||||||| ||||| ||||||||    
T  16306350 ttgctcacgtttgttactaataattttttcagaagatttaatgtcc-aatctttaatattatattttgctc 16306281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 2537803 - 2537700
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    ||||||||||||||  |||| ||||||||||||||||| |||||||||||||||         ||||||||||||||||| ||| |||||||||||||||    
T  2537803 agaggatttaaagtctaatctttaacattatattttgcacacgtttgttactaatctttttatcagaagatttaaagtcc-aatatttaacattattttt 2537705  T
Q  403 tgctc 407  Q
    |||||    
T  2537704 tgctc 2537700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 3677558 - 3677461
Alignment:
Q  259 atttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||  |||||| ||| ||||||||||||||       ||||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  3677558 atttaacattaatttttgctcacatttgttactaatatttttttagaggatttaaagttcaatctataacattatattttgctcacatttgttactaa 3677461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 32249576 - 32249688
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||| |||||||||||||        ||||||||||||||  |||| |||||||||| |||||    
T  32249576 agaggatttaaagtccaatatttaacattatttattggtcacatttgttactaat-tttttttagaggatttaaagtcaaatctttaacattattttttg 32249674  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  32249675 ctcacgtttgttac 32249688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 3677100 - 3676986
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||||||||||||| |||||||  ||| |||||||||||||        |||||||||||||| ||| | ||| |||||| ||||    
T  3677100 agaggatttaaagtccaatatttaacattattttttgcacatgtttgttactaatattttttttagaggatttaaagtccaaactttaccattatttttt 3677001  T
Q  339 gctcacgtttgttac 353  Q
    |||||||||||||||    
T  3677000 gctcacgtttgttac 3676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 2537549 - 2537432
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata-nnnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| ||||||| | ||||||||||||||||        | |||||||||||||||||| ||| |||||| ||||    
T  2537549 agaggatttaaagtccaatttttaacattattttttgctaatatttgttactaatattttttttaaaggatttaaagttcaatctttatcattatttttt 2537450  T
Q  339 gctcacgtttgttactaa 356  Q
     ||| |||||||||||||    
T  2537449 actcgcgtttgttactaa 2537432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 10928325 - 10928213
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||| ||||||||||||        |||||||||||||| ||||| ||| |||||| |||||    
T  10928325 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaat-cttttttagaggatttaaagtccaatctttaccattattttttg 10928227  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  10928226 ctcacgtttgttac 10928213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 16306043 - 16306159
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| | ||||||| ||||||| ||   ||||||||||||        ||| |||||||||||||||| |||||||||| ||||     
T  16306043 agaggatttaaagtcaaatctgtaacattattttttgctcgcgtttgttactaatcttttttcagaagatttaaagttcaatctttaacattattttttt 16306142  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  16306143 ctcacgtttgttactaa 16306159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 27900755 - 27900871
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||  ||||||||||||        |||||| ||||||| ||||| |||||||||| |||||    
T  27900755 agaggatttaaagtccaatttttaacaatattttttgatcacgtttgttactaattttttattagaggacttaaagtccaatctttaacattattttttg 27900854  T
Q  340 ctcacgtttgttactaa 356  Q
     ||||||||||||||||    
T  27900855 atcacgtttgttactaa 27900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 3677163 - 3676997
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||  ||||||||||||        |||||||||||||| ||||  |||||||||| |||||    
T  3677163 agaggatttaaagtccaatctttaacaatattttttgatcacgtttgttactaatctttttttagaggatttaaagtccaatatttaacattattttttg 3677064  T
Q  340 ctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    | || ||||||||||||          ||| ||||||||||||||| ||||| |||||||||||||||    
T  3677063 cacatgtttgttactaatattttttttagaggatttaaagtccaaa-ctttaccattattttttgctc 3676997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 2537929 - 2537845
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaac 125  Q
    |||||||||| || ||||||||||||||||| | || |||||||||| ||||  ||||||||||||||||||| ||| ||||||||    
T  2537929 acctttaaaaaatatggtgggatacttccttcagcagttgagtttaggaatttctgttgatataagttatgagaatc-ccttcaac 2537845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 10928518 - 10928465
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  10928518 agaggatttaaagttcaatctctaacattattttttgctcacgtttgttactaa 10928465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 10928839 - 10928775
Alignment:
Q  168 attgataattaatatttaatatagtgctaacaaa-tctttttctaaaatattctgagtcctaatc 231  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  10928839 attgatatttaatgtttaatatagtgctaaaaaaatctttttctaaaatattttgagtcctaatc 10928775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 2438470 - 2438581
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||||||| ||||||| | ||||||| |||  |||||||| |||        |||||||||||||| ||||  |||||||||| |||||    
T  2438470 agaggatttaaagtctaatctttaacaatattttttgctcacgtttgttaccaat-tttttttagaggatttaaagtccaatatttaacattattttttg 2438568  T
Q  340 ctcacgtttgtta 352  Q
    |||||||||||||    
T  2438569 ctcacgtttgtta 2438581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 27900818 - 27900933
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    |||||| |||||||| ||| ||||||||| ||||||| |||  ||||||||||||        |||||||||||||| ||||| ||||||||||   |||    
T  27900818 agaggacttaaagtccaatctttaacattattttttgatcacgtttgttactaat-ttcttttagaggatttaaagtccaatctttaacattattggttg 27900916  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  27900917 ctcacgtttgttactaa 27900933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 19709272 - 19709373
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||||||||||         || |||||||||||| | |||||| ||||||||||||    
T  19709272 agaggatttaaagtccaatatttaacattatattttgctcatgtttgttactaatctatttatcaaaagatttaaagttc-aatcttaaacattattttt 19709370  T
Q  403 tgc 405  Q
    |||    
T  19709371 tgc 19709373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 2438248 - 2438301
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||    
T  2438248 agaggatttaaagtccaatctttaacattatttttggctcacgtttgttactaa 2438301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 11990064 - 11990011
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||||||| |||||||||| | |||||||||    
T  11990064 agaggatttaaagttcaatctttaacattattttttgctcacatctgttactaa 11990011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 10928451 - 10928349
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    ||||||||||| || ||||| |||||||||| ||||||||||||||||||||||          ||| |||||||||||| ||||||||||| |||||||    
T  10928451 agaggatttaa-gtccaatctttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagtcc-aatctttaacaatattttt 10928354  T
Q  403 tgctc 407  Q
    |||||    
T  10928353 tgctc 10928349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 23915116 - 23915232
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata--nnnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||| ||| ||||| ||| ||||||| |||| |||||||||||||         |||||||||||||| ||| | |||||||||| ||||     
T  23915116 aggatttaaagtccaatctttaatattattttttgctcatgtttgttactaatatttttttttagaggatttaaagtccaacctttaacattattttttt 23915215  T
Q  340 ctcacgtttgttactaa 356  Q
     ||||||||||||||||    
T  23915216 gtcacgtttgttactaa 23915232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32248684 - 32248746
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    |||||||||||||||| | ||||| ||||||||  |||||||||||| ||||| |||||||||    
T  32248684 acctttaaaatatgtgctaggatatttccttgagtaattgagtttaggaattcctgttgatat 32248746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 2537673 - 2537620
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||||  ||||||||||||||||    
T  2537673 agaggatttaaagtacaatctttaacattatttttttgtcacgtttgttactaa 2537620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 3677386 - 3677333
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||  ||||||||||||||||||    
T  3677386 agaggatttaaagtccaatctttaacattattttcggctcacgtttgttactaa 3677333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 17589561 - 17589647
Alignment:
Q  270 ttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||| |||| |||||||||||||       |||||||||||||| ||||| |||||||||  ||| |||||||||| |||||||    
T  17589561 ttttttgctcatgtttgttactaatatttttttagaggatttaaagtccaatctttaacattacttttagctcacgtttattactaa 17589647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 2537803 - 2537686
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||||||| ||||||||| | |||||  ||  ||||||||||||         ||| |||||||||| ||||  |||||||||| ||||    
T  2537803 agaggatttaaagtctaatctttaacattatattttgcacacgtttgttactaatctttttatcagaagatttaaagtccaatatttaacattatttttt 2537704  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||| ||||||||||    
T  2537703 gctcacgattgttactaa 2537686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 17589237 - 17589277
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtt 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  17589237 gatttaaagttcaatctttaacgttatattttgctcacgtt 17589277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 17589594 - 17589710
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| |||||||||  |||| | |||  ||| |||||||||       |||||||||| |||  || | |||||| ||| |||||    
T  17589594 agaggatttaaagtccaatctttaacattacttttagctcacgtttattactaatatttttttagaggatttatagtctaaactttaacaatattttttg 17589693  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  17589694 ctcacgtttgttactaa 17589710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 2438470 - 2438520
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    ||||||||||||||  |||| |||||| ||| |||||||||||||||||||    
T  2438470 agaggatttaaagtctaatctttaacaatattttttgctcacgtttgttac 2438520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 2438532 - 2438586
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||| ||||||||||||| ||||||| |||  ||||||| ||||    
T  2438532 agaggatttaaagtccaatatttaacattattttttgctcacgtttgttattaat 2438586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 3676709 - 3676659
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  3676709 agaggatttaaagtccaaactttaccattattttttgctcacgtttgttac 3676659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 7771871 - 7771921
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||| ||||||| |||||||||| |||||| | ||||||||||    
T  7771871 agaggatttaaaattcaatctttaacattattttttgcccgcgtttgttac 7771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 23914278 - 23914320
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagt 82  Q
    ||||||||||||||||||||||||||| |||||  ||||||||    
T  23914278 acctttaaaatatgtggtgggatacttacttgagtaattgagt 23914320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 10928684 - 10928608
Alignment:
Q  324 ttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattatttt 401  Q
    |||||||||| ||||||||||||||||||||||          ||| |||||||||||| ||||||||||||||||||    
T  10928684 ttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagtcc-aatctttaacattatttt 10928608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 16306172 - 16306217
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgt 350  Q
    |||||||||||| ||||| |||||||||| |||| |||||||||||    
T  16306172 aggatttaaagtccaatctttaacattattttttcctcacgtttgt 16306217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 17589403 - 17589456
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||  |||| ||||| ||| ||||||||||||||||||    
T  17589403 agaggatttaaagtccaatatttaaaattatttttagctcacgtttgttactaa 17589456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 17589782 - 17589835
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||| | |||||||||| ||| | ||||||||||||||||    
T  17589782 agaggatttaaagtccaacctttaacattatttttagttcacgtttgttactaa 17589835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 27900692 - 27900745
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||| | |||||| ||||||| || || |||||||||||||||||||    
T  27900692 agaggatttaatgctcaatctttaacataattttgtgctcacgtttgttactaa 27900745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 32249451 - 32249504
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||||||| ||||||| || ||||  ||||||||||||||||    
T  32249451 agaggatttaaaattcaatctttaacatgattttttagtcacgtttgttactaa 32249504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 32249576 - 32249677
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||  |||||||||| | ||| |||| |||||||||||          ||| ||||||||||| ||||||||||||||||||||    
T  32249576 agaggatttaaagtccaatatttaacattatttattggtcacatttgttactaatttttttt--agaggatttaaagtc-aaatctttaacattattttt 32249672  T
Q  403 tgctc 407  Q
    |||||    
T  32249673 tgctc 32249677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 175022 - 175070
Alignment:
Q  308 atttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||| |||||| ||| | ||||| ||||||||||||||    
T  175022 atttaaagttcaatcattaacaatatttcttgctaacgtttgttactaa 175070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 32249512 - 32249563
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    |||||||||||||| ||||| |||||| | | |||||||||||||||||||||    
T  32249512 agaggatttaaagtccaatctttaacagttt-ttttgctcacgtttgttacta 32249563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 52)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 35370118 - 35369981
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  | ||| ||||||||||||||||||| ||| |||||||||||||||||| |||    
T  35370118 acctttaaaatatgtggtgggatacttccttgagcaattgagtttaagagttcctgttgatataagttatgagtatc-ccttcaacctcgtcaaataaca 35370020  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| |||||||  ||||||||||||||||||||    
T  35370019 acaaattatgttcttctcctggaaactgattgataatta 35369981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 28098492 - 28098331
Alignment:
Q  17 acatcaaaggtgcatcnnnnnnnacctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatc 116  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||  || ||| ||||||||| ||||||||||||||||||||||||| |||    
T  28098492 acatcaaaggtgcatctttttttacctttaaaatatgtggtgggatacttccccgagcaaatgagtttaggaattcatgttgatataagttatgagtatc 28098393  T
Q  117 tccttcaacctcgtcaaatgacaacaaattatattcttctattggaaactgattgataatta 178  Q
     ||||||||||||| ||||||||||||||||| || ||||  || ||| | |||||||||||    
T  28098392 cccttcaacctcgttaaatgacaacaaattatgttattctcctgaaaaataattgataatta 28098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 53361095 - 53360957
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||| ||||||||||||||||||||| ||||| || |||||| ||  ||||| | ||||||||||||||||| ||||||||||||||||| ||||||||    
T  53361095 accttaaaaatatgtggtgggatactttcttgagcagttgagtatatgaattcctattgatataagttatgagtatctccttcaacctcgttaaatgaca 53360996  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    |||||||||||| ||||  || ||||| |||||||||||    
T  53360995 acaaattatattattctcctgaaaactaattgataatta 53360957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 356
Target Start/End: Complemental strand, 28097109 - 28096925
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||| ||| ||||||||| |||||    
T  28097109 attaatatttaatatagtgctaacaaatctttttctaaaatattttgagtcctaatc-tttttttagaggatttaaagtccaatctttaacattattttt 28097011  T
Q  275 tgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaac---attatattttgctcacgtttgttactaa 356  Q
    || |||  ||||||||||||         |||| ||||||||| ||||| |||||   ||||| ||||||||||||||||||||||    
T  28097010 tgctcacgtttgttactaatcttttttatagagtatttaaagtccaatctttaacattattattttttgctcacgtttgttactaa 28096925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 51138029 - 51138167
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||| |||||| |||||||||||||| ||||| || |||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||| |||||| |    
T  51138029 accttgaaaatacgtggtgggatacttgcttgagcagttgagtttaggaatttctgttgatataagttatgagtatccccttcaacctcgttaaatgaaa 51138128  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || ||||  || ||||| ||||| |||||    
T  51138129 acaaattatgttattctcctgaaaactcattgacaatta 51138167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 51139081 - 51139257
Alignment:
Q  181 atttaatatagtgctaacaaatctttttctaaaatattctgagtcctaa--tcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgtt 278  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |         ||||||||||||||  ||| ||||||||| ||||| |||    
T  51139081 atttaatatagtgctaacaaatctttttctaaaatattttgagtcctaattttttttttttagaggatttaaagttcaatctttaacattatttttcgtt 51139180  T
Q  279 catatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||| ||||||||||||        ||| |||||||||||||||| |||||| ||| ||||||||||| ||||||||||    
T  51139181 catgtttgttactaatctttttttaga-gatttaaagttcaatctttaacaatattttttgctcacgcttgttactaa 51139257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 7107421 - 7107518
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatga 137  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||| |||   ||||||||||||||||||| ||| | ||||||||||||||||||    
T  7107421 acctttaaaatatgtagtgggatacttccctgagcaattgagtttaggaatatctgttgatataagttatgagtatccctttcaacctcgtcaaatga 7107518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 175 - 354
Target Start/End: Complemental strand, 53360122 - 53359943
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||         |||| |||||||||  ||| ||||||||  |||||    
T  53360122 attaatatttaatatagtactaacaaatttttttctaaaatattttgagtcctaat-atttttttagagtatttaaagttcaatctttaacatcattttt 53360024  T
Q  275 tgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttact 354  Q
    || ||| |||||||||||||         |||||||||||||||||||| ||||||| || ||||||||||| ||||||||    
T  53360023 tgctcacatttgttactaatcttttttttagaggatttaaagttcaatctttaacatgattttttgctcacgcttgttact 53359943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 35369713 - 35369596
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  |||||||||||||        |||||||||||||||||||| |||||||||| ||||    
T  35369713 agaggatttaaagtccaatctttaacattattttttgctcacttttgttactaatattttttgtagaggatttaaagttcaatctttaacattatttttt 35369614  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||| ||||||||||||    
T  35369613 gctcatgtttgttactaa 35369596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 7115136 - 7115268
Alignment:
Q  161 gaaactgattgataattaatatttaatatagtgctaacaa-atctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaata 259  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||| |||||| |||||        ||||||||||||  | |||     
T  7115136 gaaactgattgataattaatatttaatatagtgctaacaatattttttttttaaatattttgagtcttaatcttttttttagaggatttaaa--ccaatt 7115233  T
Q  260 tttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||| |||||||||||  ||||||||||||    
T  7115234 tttaacattattttttgttcacgtttgttactaat 7115268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 35863289 - 35863405
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |   ||||||||||||||       |||||||||||||| ||||| |||||||||| |||||    
T  35863289 agaggatttaaagtccaatctttaacattattttttgctaccatttgttactaatatttttttagaggatttaaagtccaatctttaacattattttttg 35863388  T
Q  340 ctcacgtttgttactaa 356  Q
    ||||| |||||||||||    
T  35863389 ctcacatttgttactaa 35863405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 27003717 - 27003894
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||        |||||||||||| |||||| ||||||| | ||||||    
T  27003717 ttaacatttaatatagcgctaacaaatctttttctaaaatattttgaatcctaatcttttttttagaggatttaaattctaatctttaacaatatttttt 27003816  T
Q  276 gttcatatttgttactaa--tannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgtt 351  Q
    | |||  ||||||| |||  |        |||||||||||||| ||||  |||||||||| ||||||||| |||||||    
T  27003817 gatcacgtttgttattaatctttttttttagaggatttaaagtccaatatttaacattattttttgctcatgtttgtt 27003894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 18197144 - 18196966
Alignment:
Q  177 taatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttg 276  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||         ||| ||||||||||| ||| |||||| || || |||     
T  18197144 taatatttaatatagtgctaacaaatctttttttaaaatattttgagtcataat-ttttttttagatgatttaaagtccaatctttaaccttattcttta 18197046  T
Q  277 ttcatatttgttactaa---tannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
     |||| |||||||||||   |        |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  18197045 ctcatgtttgttactaatcttttttttttagaggatttaaagtccaatctttaacattattttttgctcacgtttgttac 18196966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 53359933 - 53359820
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| |||||||||||| |||||| |||||        |||||||||||||| ||||| ||| |||||| |||||    
T  53359933 agaggatttaaagtccaatctttaacattattttttgttcatgtttgtttctaatctttttttagaggatttaaagtccaatctttaccattattttttg 53359834  T
Q  340 ctcacgtttgttac 353  Q
    ||||| ||||||||    
T  53359833 ctcacatttgttac 53359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 3422144 - 3422198
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaat 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3422144 ttaatgtttaatatagtgctaacaaatctttttctaaaatattttgagtcctaat 3422198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 22176042 - 22175993
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22176042 gatttaaagttcaatctttaacattatattttgctcacgtttgttactaa 22175993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 28096788 - 28096672
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| |||||||  ||  |||||||| |||        |||||||||||||| ||||  |||||||||| |||||    
T  28096788 agaggatttaaagtccaatctttaacattattttttgcccacgtttgttaccaatctttttttagaggatttaaagtccaatatttaacattattttttg 28096689  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  28096688 ctcacgtttgttactaa 28096672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 51139270 - 51139386
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||| | ||||||  |||  ||||||||||||        |||||||||||||| ||||| ||||||||||||||||    
T  51139270 agaggatttaaagttcaatctttaacaatatttttttctcacgtttgttactaatctttttttagaggatttaaagtccaatctttaacattatattttg 51139369  T
Q  340 ctcacgtttgttactaa 356  Q
     ||||||||||||||||    
T  51139370 ttcacgtttgttactaa 51139386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 35369649 - 35369534
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||| ||||||||||||        |||||||||||||| ||||| | || | ||| |||||    
T  35369649 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaatctttttttagaggatttaaagtccaatcttgaaaaatattttttg 35369550  T
Q  340 ctcacgtttgttacta 355  Q
    ||||||||||||||||    
T  35369549 ctcacgtttgttacta 35369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 22101105 - 22101056
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  22101105 gatttaaagttcaatctttaacattattttttgctcacgtttgttactaa 22101056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 28096914 - 28096751
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||| ||| ||||||| |||  |||||||||||||       |||||||||||||| ||| |  ||||| ||| |||||    
T  28096914 agaggatttaaagtccaatttttaatattattttttggtcacgtttgttactaatatttttttagaggatttaaagtccaacctataacaatattttttg 28096815  T
Q  340 ctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgc 405  Q
    |||| ||||||||||||          ||| |||||||||||| ||||||||||||||||||||||    
T  28096814 ctcatgtttgttactaatccatttt-tagaggatttaaagtcc-aatctttaacattattttttgc 28096751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 22100912 - 22100796
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||| ||||| ||| ||||||||| ||||||  |||  ||||||||||||        ||||||||||| |||||||| ||||||| || |||||    
T  22100912 agaggatttcaagtcaaatctttaacattattttttactcaagtttgttactaatcattttttagaggatttaatgttcaatccttaacataattttttg 22100813  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  22100812 ctcaagtttgttactaa 22100796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 34492887 - 34492832
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  34492887 ttaatgtttaatatagtgcttacaaatctttttctaaaatattttgagttctaatc 34492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 35369898 - 35369786
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    ||||||||||| ||| ||||||||| ||||||| |||  |||||  |||||        |||| ||||||||||||||| | |||||||| |||||||||    
T  35369898 gatttaaagtccaatctttaacattattttttgctcacgtttgtcgctaatctttttttagagtatttaaagttcaatcttcaacattattttttgctca 35369799  T
Q  344 cgtttgttactaa 356  Q
    |||||||||||||    
T  35369798 cgtttgttactaa 35369786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 35863352 - 35863467
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaa--tannnnnnnagaggatttaaagttcaatcgttaacattatattt 337  Q
    ||||||||||||||| ||| ||||||||| ||||||| ||| ||||||||||||  |        |||||||||||||| ||||| |||  ||||| |||    
T  35863352 agaggatttaaagtccaatctttaacattattttttgctcacatttgttactaatctttttttttagaggatttaaagtgcaatctttattattattttt 35863451  T
Q  338 tgctcacgtttgttac 353  Q
    ||||||||||||||||    
T  35863452 tgctcacgtttgttac 35863467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 22176107 - 22176054
Alignment:
Q  178 aatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    |||| |||| |||||||||||||||||||||||||||||||  |||||||||||    
T  22176107 aatacttaaaatagtgctaacaaatctttttctaaaatattacgagtcctaatc 22176054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 28096725 - 28096612
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||||||||||||| ||||||| |||  |||||||||||||       ||| ||||| ||||  |||| ||| |||||| ||||     
T  28096725 agaggatttaaagtccaatatttaacattattttttgctcacgtttgttactaatatttttttagaagattttaagtctaatctttaccattattttttc 28096626  T
Q  340 ctcacgtttgttac 353  Q
     |||||||||||||    
T  28096625 ttcacgtttgttac 28096612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 22175851 - 22175735
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||| || || ||| ||||||||| ||||||  |||  ||||||||||||        ||||||||||| |||||||| ||||||| || |||||    
T  22175851 agaggatttcaaatcaaatctttaacattattttttactcaagtttgttactaatcattttttagaggatttaatgttcaatccttaacataattttttg 22175752  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  22175751 ctcaagtttgttactaa 22175735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 28212704 - 28212751
Alignment:
Q  184 taatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  28212704 taatacagtgctaacaaatatttttctaaaatattttgagtcctaatc 28212751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 13473629 - 13473576
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| || ||||||||||||||| |||||||    
T  13473629 agaggatttaaagtccaatctttaacaataaattttgctcacgtttattactaa 13473576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 44822665 - 44822559
Alignment:
Q  251 agtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgctcacgtttg 349  Q
    |||| ||||||||||||| ||||||| |||| || ||||||||||        |||||||||||||| ||| | |||||||||| ||||  |||||||||    
T  44822665 agtccaatatttaacattattttttgctcatgttcgttactaatatttattttagaggatttaaagtccaacctttaacattatttttttgtcacgtttg 44822566  T
Q  350 ttactaa 356  Q
    |||||||    
T  44822565 ttactaa 44822559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 53360058 - 53360005
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||||||||| ||||||| || |||||||||| |||||||||||    
T  53360058 agagtatttaaagttcaatctttaacatcattttttgctcacatttgttactaa 53360005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 34492468 - 34492420
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgtt 351  Q
    |||||||||||||| ||||| ||| |||||| |||||||||||||||||    
T  34492468 agaggatttaaagtccaatctttaccattattttttgctcacgtttgtt 34492420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 35863289 - 35863391
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||| |||||||||| |||||||  | |||||||||||          ||| |||||||||||||| |||||||||||||||||    
T  35863289 agaggatttaaagtccaatctttaacattattttttgctaccatttgttactaatattttttt-agaggatttaaagtccaa-tctttaacattattttt 35863386  T
Q  403 tgctc 407  Q
    |||||    
T  35863387 tgctc 35863391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 37436695 - 37436751
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaata-ttctgagtcctaatc 231  Q
    ||||| |||||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  37436695 ttaatgtttaatatagtgctaaaaaatatttttctaaaatatttttgagtcctaatc 37436751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 44822612 - 44822500
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||  ||||||||| ||||||  |||  ||||||||||||        |||| ||||||||| ||||| ||| |||||| |||||    
T  44822612 agaggatttaaagtccaacctttaacattatttttttgtcacgtttgttactaat-tttttttagagcatttaaagtccaatctttaccattattttttg 44822514  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  44822513 ctcacgtttgttac 44822500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 22100973 - 22100926
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgt 350  Q
    |||||||||||||| ||||| |||||| ||| ||||||||||||||||    
T  22100973 agaggatttaaagtccaatctttaacaatattttttgctcacgtttgt 22100926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 22175912 - 22175865
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgt 350  Q
    |||||||||||||| ||||| |||||| ||| ||||||||||||||||    
T  22175912 agaggatttaaagtccaatctttaacaatattttttgctcacgtttgt 22175865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 407
Target Start/End: Complemental strand, 35369900 - 35369863
Alignment:
Q  369 aagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35369900 aagatttaaagtccaa-tctttaacattattttttgctc 35369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 44823622 - 44823560
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    ||||||||||||| ||||||||||||| |||||  |||||||||||  |||||  ||||||||    
T  44823622 acctttaaaatatatggtgggatacttacttgagtaattgagtttaagaattccggttgatat 44823560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 51139333 - 51139452
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn----agaggatttaaagttcaatcgttaacattatat 335  Q
    ||||||||||||||| ||| ||||||||| | |||||||||  ||||||||||||            ||||||||||||||  ||||||||||| ||| |    
T  51139333 agaggatttaaagtccaatctttaacattatattttgttcacgtttgttactaatctttttttttttagaggatttaaagtcaaatcgttaacaatat-t 51139431  T
Q  336 tttgctcacgtttgttactaa 356  Q
    ||| |||||||||||||||||    
T  51139432 ttttctcacgtttgttactaa 51139452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 3422212 - 3422261
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||| ||||| |||||| ||| |||| |||||||||||||||||    
T  3422212 gatttaaagtccaatctttaacaatattttttactcacgtttgttactaa 3422261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 3422334 - 3422383
Alignment:
Q  241 gaggatttaaagtctaatatttaacattgttttttgttcatatttgttac 290  Q
    |||||||||||||| |||||||| |||| |||||||||||  ||||||||    
T  3422334 gaggatttaaagtccaatatttaccattattttttgttcacgtttgttac 3422383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 7115349 - 7115389
Alignment:
Q  366 cagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  7115349 cagaagatttaaagtccaa-tctttaacattatttattgctc 7115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 7115354 - 7115403
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||| ||||| |||||||||| | ||||||| ||||||||||||    
T  7115354 gatttaaagtccaatctttaacattatttattgctcaagtttgttactaa 7115403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 13473728 - 13473691
Alignment:
Q  194 ctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  13473728 ctaacaaatctttttctaaaatatttttagtcctaatc 13473691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 35369522 - 35369469
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| || || |||||||||| ||||||||  ||||||||||||    
T  35369522 agaggatttaaagtccagtctttaacattattttttgctcttgtttgttactaa 35369469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 53359933 - 53359880
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||||| ||| ||||||| ||||    
T  53359933 agaggatttaaagtccaatctttaacattattttttgttcatgtttgtttctaa 53359880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 7115612 - 7115656
Alignment:
Q  309 tttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||    
T  7115612 tttaaagtccaatctttaacattatttgttgctcacgtttgttac 7115656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 18197012 - 18196977
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18197012 gatttaaagtccaa-tctttaacattattttttgctc 18196977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 28097041 - 28097006
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  28097041 gatttaaagtccaa-tctttaacattattttttgctc 28097006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 35369709 - 35369674
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35369709 gatttaaagtccaa-tctttaacattattttttgctc 35369674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 20131700 - 20131838
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  20131700 acctttaaaatatgtggtgggatacttccatgagcagttgagtttaggaattcctgttgatataagttatgagtatccccttcaacctcgttaaatgaca 20131799  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || ||||  || ||||| |||||||||||    
T  20131800 acaaattatgttattctcctgaaaactaattgataatta 20131838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 407
Target Start/End: Complemental strand, 8529004 - 8528772
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| ||| |||||||         ||||||||||||||| ||| ||| ||||| |||||    
T  8529004 attaatatttaatatagtgctaaaaaaattttttctaaaatattttgaatcctaatattttttttagaggatttaaagtccaatctttcacattattttt 8528905  T
Q  275 tgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagat 373  Q
    ||||||  ||||||||||||          ||||||||||| || |||| ||||||||||||||||||||| |||||||| ||          |||||||    
T  8528904 tgttcacgtttgttactaatcttgtttttggaggatttaaactttaatctttaacattatattttgctcacatttgttacaaatctttttataagaagat 8528805  T
Q  374 ttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||| ||||||||||||||||||||||||||    
T  8528804 ttaaagt-caaatctttaacattattttttgctc 8528772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 24161534 - 24161638
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||| |||||| ||||||||||||||| ||| | ||||||  ||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  24161534 acctttaaaacatgtggcgggatacttccttgagcaactaagtttaagaattcatgttgatataagttatgagtatcctcttcaacctcgtcaaatgaca 24161633  T
Q  140 acaaa 144  Q
    |||||    
T  24161634 acaaa 24161638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 44506461 - 44506353
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||||||||||| |||||| | || |||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||||||    
T  44506461 acctttaaaatatgtggtgggataattccttcagcagttgagtttaggaattcctgttgatataagttatgaatatccccttcaaccccgttaaatgaca 44506362  T
Q  140 acaaattat 148  Q
    |||||||||    
T  44506361 acaaattat 44506353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 14495782 - 14495656
Alignment:
Q  48 aatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaatta 147  Q
    |||||||||||||||| |||||| | |||||| |||||| ||||| | |||  |||||||||||| ||| | |||| |||| ||||||||||||||||||    
T  14495782 aatatgtggtgggatatttccttaagcaattgtgtttaggaattcctcttgcaataagttatgagtatccctttcagcctcatcaaatgacaacaaatta 14495683  T
Q  148 tattcttctattggaaactgattgata 174  Q
    | |||||||   |||||||||||||||    
T  14495682 tgttcttctcccggaaactgattgata 14495656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 20609044 - 20608982
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  20609044 acctttaaaatatgtggtgggatacttccttgaacatttgagtttaggaattcatgttgatat 20608982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 356
Target Start/End: Original strand, 30143671 - 30143849
Alignment:
Q  179 atatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgtt 278  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| |||||        || |||||||||||| ||| ||||||||| ||||||  |    
T  30143671 atatttaatatagtgctaacatatctttttctaaaatattttgagtcataatc-tttttttagtggatttaaagtccaatctttaacattattttttcct 30143769  T
Q  279 catatttgttactaata--nnnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||  |||||||||||||         |||||||||||||||||||| |||||| ||| |||| ||||| |||||||||||    
T  30143770 cacgtttgttactaatatttttttttagaggatttaaagttcaatctttaacaatattttttactcacatttgttactaa 30143849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 50232339 - 50232106
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc----nnnnnnnnagaggatttaaagtctaatatttaacattgtt 271  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||            ||| ||||||||||  ||| ||||||| | ||    
T  50232339 ttaatgtttaatatagtgctaacaaatctttttctaaaatattttgagtcctaatccttttttttattagatgatttaaagttcaatctttaacaatatt 50232240  T
Q  272 ttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaag 371  Q
    ||||| |||  ||||||||||||        | |||||||||||| ||||  |||||||||| ||||||||||||||||||||||          ||| |    
T  50232239 ttttgctcacgtttgttactaattattttttaaaggatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagagg 50232141  T
Q  372 atttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||| | ||||||||||||||||||||||||    
T  50232140 atttaaagttc-aatctttaacattattttttgctc 50232106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 356
Target Start/End: Original strand, 29698503 - 29698682
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||        ||||||||||||||| ||| ||||||||| | |||    
T  29698503 attaatatttaatatagtgctaacaaatttttttctaaaatat--tgagtcctagtc-tttttttagaggatttaaagtccaatctttaacattatattt 29698599  T
Q  275 tgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    || |||  |||||| |||||         | | |||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  29698600 tgctcacgtttgttgctaatctttttatcataagatttaaagttcaatctttaacattattttttgctcacgtttgttgctaa 29698682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 407
Target Start/End: Complemental strand, 50232206 - 50232042
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgc 340  Q
    ||||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||         |||||||||||||||||||| |||||||||| ||||||    
T  50232206 aggatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagttcaatctttaacattattttttgc 50232108  T
Q  341 tcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||||          ||| |||||||||| | ||||||||||||||||||||||||    
T  50232107 tcacgtttgttactaatcttttttttagatgatttaaagttc-aatctttaacattattttttgctc 50232042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 14495226 - 14495113
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  | | ||||||||| |||||||||||| ||||||||||||        |||||||||||||| ||||| ||| |||||| |||||    
T  14495226 agaggatttaaagttcagtctttaacattattttttgttcatgtttgttactaatctttttttagaggatttaaagtccaatctttaccattattttttg 14495127  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  14495126 ctcacgtttgttac 14495113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 29698565 - 29698668
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||         || |||||||||||| | |||||||||||||||||||    
T  29698565 agaggatttaaagtccaatctttaacattatattttgctcacgtttgttgctaatctttttatcataagatttaaagttc-aatctttaacattattttt 29698663  T
Q  403 tgctc 407  Q
    |||||    
T  29698664 tgctc 29698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 30146416 - 30146528
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    ||||||||||| ||| ||||||| | ||||||  ||| |||||||| |||||       |||||||||||||||||||| |||||||||| |||||||||    
T  30146416 gatttaaagtccaatctttaacaatattttttactcacatttgttattaatatttttttagaggatttaaagttcaatctttaacattattttttgctca 30146515  T
Q  344 cgtttgttactaa 356  Q
     ||||||||||||    
T  30146516 tgtttgttactaa 30146528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 50232014 - 50231904
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    ||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||       |||||||||||||||||||| |||||||||| |||||||||    
T  50232014 gatttaaagtcaaatttttaacaat-ttttttgctcatgtttgttactaatatttttt-agaggatttaaagttcaatctttaacattattttttgctca 50231917  T
Q  344 cgtttgttactaa 356  Q
     ||||||||||||    
T  50231916 tgtttgttactaa 50231904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 50232145 - 50232028
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||  ||||||||||||         ||| |||||||||||||||| |||||||||| ||||    
T  50232145 agaggatttaaagttcaatctttaacattattttttgctcacgtttgttactaatcttttttttagatgatttaaagttcaatctttaacattatttttt 50232046  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||||||||||||||||    
T  50232045 gctcacgtttgttactaa 50232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 23997855 - 23997744
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| ||   |||||||||||||       |||||||||||||| ||||| ||| |||||| |||||    
T  23997855 agaggatttaaagtccaatctttaacattattttttgctcgcgtttgttactaatatttttttagaggatttaaagtccaatctttaccattat-ttttg 23997757  T
Q  340 ctcacgtttgtta 352  Q
    |||||||||||||    
T  23997756 ctcacgtttgtta 23997744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 29697467 - 29697578
Alignment:
Q  67 ccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaacaaattatattcttctattggaaact 166  Q
    |||||| || |||||||||  ||||| ||||||||||||||||||| ||   |||||||||||| ||| ||||||||||||| || ||||  || |||||    
T  29697467 ccttgagcagttgagtttaagaattcttgttgatataagttatgagtattctcttcaacctcgttaaacgacaacaaattatgttattctcctgaaaact 29697566  T
Q  167 gattgataatta 178  Q
     |||||||||||    
T  29697567 aattgataatta 29697578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 30143796 - 30143912
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||| | ||||||  ||| |||||||||||||        |||||||||||||| ||||| |||||||||| |||||    
T  30143796 agaggatttaaagttcaatctttaacaatattttttactcacatttgttactaatctttttttagaggatttaaagtccaatcattaacattattttttg 30143895  T
Q  340 ctcacgtttgttactaa 356  Q
    |||| ||||||||||||    
T  30143896 ctcatgtttgttactaa 30143912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 237661 - 237548
Alignment:
Q  241 gaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgc 340  Q
    |||||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||        |||||||||||||| ||||| ||| |||||| |||||     
T  237661 gaggatttaaagtcaaatctttaacattattttttggtcacgtttgttactaat--ttttttagaggatttaaagtccaatctttaccattattttttgg 237564  T
Q  341 tcacgtttgttactaa 356  Q
    ||||||||||||||||    
T  237563 tcacgtttgttactaa 237548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 8528552 - 8528499
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  8528552 agaggatttaaagttcaatctttaacattattttttgctcaagtttgttactaa 8528499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 43574667 - 43574780
Alignment:
Q  243 ggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgct 341  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||||||         |||||||||||| | ||||| |||||| ||| ||| |||    
T  43574667 ggatttaaagtcaaatatttaacattattttttgttcacatttgttactaatcttttttttagaggatttaaaatccaatctttaaca-tatttttagct 43574765  T
Q  342 cacgtttgttactaa 356  Q
    |||||||||||||||    
T  43574766 cacgtttgttactaa 43574780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 237601 - 237490
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||  ||||||||||||        |||||||||||||| ||||| ||| |||||| |||||    
T  237601 agaggatttaaagtccaatctttaccattattttttggtcacgtttgttactaat--ttttttagaggatttaaagtccaatctttaccattattttttg 237504  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  237503 ctcacgtttgttac 237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 14495355 - 14495303
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    |||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  14495355 agagaatttaaagttcaatctttaacattattttttgctcacgtttgttacta 14495303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 20132253 - 20132357
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    ||||||||| ||||||| || |||||||||| ||||||||||||||||||||||        | ||| ||||||||   | |||||||||||||||||||    
T  20132253 agaggattttaagttcagtctttaacattattttttgctcacgtttgttactaatcttttttctagaggatttaaaagtcgaatctttaacattattttt 20132352  T
Q  403 tgctc 407  Q
    |||||    
T  20132353 tgctc 20132357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 14495546 - 14495495
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  14495546 aggatttaaagtccaacctttaacattatattttgctcacgtttgttactaa 14495495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 30158512 - 30158562
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  30158512 agaggatttaaagtccaatctttaacattattttttgctcacgtttgttac 30158562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 23997855 - 23997802
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| |||||||| |||||||||||||    
T  23997855 agaggatttaaagtccaatctttaacattattttttgctcgcgtttgttactaa 23997802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 43574851 - 43574904
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||    
T  43574851 agaggatttaaagtccaatctttaacattattttttgctcatgtttgttactaa 43574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 20132751 - 20132803
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    |||||||||||||||||||| |||  ||||| |||||||||||||||||||||    
T  20132751 agaggatttaaagttcaatctttacaattattttttgctcacgtttgttacta 20132803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 30146475 - 30146592
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||| ||||||||||||         || |||||||||||  |||||||||| |||| ||||    
T  30146475 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaatctttctttcaggggatttaaagtataatcgttaaccttatttttt 30146574  T
Q  339 gctcacgtttgttactaa 356  Q
     |||||||||||||||||    
T  30146575 actcacgtttgttactaa 30146592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 8528680 - 8528513
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgtt-actaatannnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  ||| || ||||||        ||||||||||||||  |||| |||||| ||| |||     
T  8528680 agaggatttaaagtccaatctttaacattattttttggtcacgtttttttactaatctttttttagaggatttaaagtcaaatctttaacaatatttttc 8528581  T
Q  339 gctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||||||          ||| |||||||||| | ||||||||||||||||||||||||    
T  8528580 gctcacgtttgttactaatcttttttttagaggatttaaagttc-aatctttaacattattttttgctc 8528513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 24162446 - 24162608
Alignment:
Q  244 gatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctca 343  Q
    |||||||| || ||||||||||||| || |||  | |  |||||||||||||       ||| |||||||||||||||| |||||| |||  |||| |||    
T  24162446 gatttaaaatcaaatatttaacattattgtttccttacgtttgttactaatatttttttagacgatttaaagttcaatctttaacaatattatttgttca 24162545  T
Q  344 cgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||          ||| |||||||||||| ||||||||||| ||||||||||||    
T  24162546 cgtttgttactaaccttttttttagatgatttaaagtcc-aatctttaacaatattttttgctc 24162608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 30143986 - 30144036
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||||||||    
T  30143986 agaggatttaaagtccaatttttaacattattttttgctcacgtttgttac 30144036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 30146730 - 30146780
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||||||||    
T  30146730 agaggatttaaagtccaatttttaacattattttttgctcacgtttgttac 30146780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 43574851 - 43574905
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||    
T  43574851 agaggatttaaagtccaatctttaacattattttttgctcatgtttgttactaat 43574905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 8528807 - 8528758
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||  |||| |||||||||| ||||||||||||||||||||||    
T  8528807 gatttaaagtcaaatctttaacattattttttgctcacgtttgttactaa 8528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 14495226 - 14495173
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||| || |||||||||| ||||| ||| ||||||||||||    
T  14495226 agaggatttaaagttcagtctttaacattattttttgttcatgtttgttactaa 14495173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 29698759 - 29698812
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||| ||| ||||| |||||||||| ||||| ||||||||||||||||    
T  29698759 agaggatttagagtccaatctttaacattattttttggtcacgtttgttactaa 29698812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 407
Target Start/End: Original strand, 30158391 - 30158551
Alignment:
Q  245 atttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcac 344  Q
    |||||||||| ||| ||||||||| ||||||| |||| |||||||||||||          ||||||||||| ||||| ||||| |||| |||| ||||     
T  30158391 atttaaagtccaatctttaacattattttttgctcatgtttgttactaatatttttttcagggatttaaagtacaatctttaaccttattttttactcag 30158490  T
Q  345 gtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||| |||          ||| |||||||||||| ||||||||||||||||||||||||    
T  30158491 gtttgttattaatctttttt-tagaggatttaaagtcc-aatctttaacattattttttgctc 30158551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 43574606 - 43574655
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||  |||||| ||| ||||||||||||||||||||||    
T  43574606 gatttaaagttcaatatttaacaatattttttgctcacgtttgttactaa 43574655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 8528552 - 8528439
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||  |||||||||||||       |||||||||||||| ||||| | |  ||||| |||||    
T  8528552 agaggatttaaagttcaatctttaacattattttttgctcaagtttgttactaatatttttttagaggatttaaagtccaatcttcacaattattttttg 8528453  T
Q  340 ctcacgtttgttac 353  Q
     | |||||||||||    
T  8528452 tttacgtttgttac 8528439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 30143859 - 30143976
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| |||  |||||||| ||||||| |||| ||||||||||||         || ||||||||||| ||||| ||||| |||| ||||    
T  30143859 agaggatttaaagtccaatcattaacattattttttgctcatgtttgttactaatctttttttcaggggatttaaagtacaatctttaaccttatttttt 30143958  T
Q  339 gctcacgtttgttactaa 356  Q
     |||| ||||||||||||    
T  30143959 actcaggtttgttactaa 30143976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 23997851 - 23997809
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctcgcctttg 414  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  23997851 gatttaaagtccaa-tctttaacattattttttgctcgcgtttg 23997809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 20132317 - 20132371
Alignment:
Q  303 agaggatttaaagttc-aatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||  || |||| |||||||||| ||||||||||||||||||||||    
T  20132317 agaggatttaaaagtcgaatctttaacattattttttgctcacgtttgttactaa 20132371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 24162573 - 24162619
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||||||    
T  24162573 gatttaaagtccaatctttaacaatattttttgctcacgtttgttac 24162619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 50231957 - 50231903
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||  ||| ||||||||| ||||||| |||| ||||||||||||    
T  50231957 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttactaat 50231903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 30146603 - 30146656
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||| | ||||| |||||||||| ||||||||| ||||||||||||    
T  30146603 agagaatttaaaatccaatctttaacattattttttgctcatgtttgttactaa 30146656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 43574855 - 43574890
Alignment:
Q  371 gatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43574855 gatttaaagtccaa-tctttaacattattttttgctc 43574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 23637149 - 23637287
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||  ||||| || ||||||||||||| || ||| ||||||||||||||||| ||||    
T  23637149 acctttaaaatatatggtgggatacttccttaagcaattgagtttaagaattcctgctgatataagttataagtatccccttcaacctcgtcaaacgaca 23637248  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| |||||||  || |||||||||||||||||    
T  23637249 acaaattatgttcttctcctgaaaactgattgataatta 23637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 23637660 - 23637525
Alignment:
Q  43 tttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaaca 142  Q
    |||||||||| ||||||||||||||||||| |||||||| |||  ||||| || |||||||||||||||| ||| ||| |||||| |||||| |||||||    
T  23637660 tttaaaatatatggtgggatacttccttgagcaattgagcttaagaattcttgctgatataagttatgagtatcccctacaaccttgtcaaacgacaaca 23637561  T
Q  143 aattatattcttctattggaaactgattgataatta 178  Q
     ||||| ||||| | |||||||||||||||||||||    
T  23637560 cattatgttcttatcttggaaactgattgataatta 23637525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 24447362 - 24447225
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||||| || |||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  24447362 acctttaaaatatgtggtgggatacttccttgagcagttgagtttaagaattcctgttgatataagttatgagtatc-ccttcaacctcgttaaatgaca 24447264  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    |||| |||| ||  |||  || ||||| |||||||||||    
T  24447263 acaatttatgttaatctcctgaaaactaattgataatta 24447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 175 - 335
Target Start/End: Complemental strand, 24410539 - 24410380
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttt 274  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||         | ||||||||||||||||| ||||||||| |||||    
T  24410539 attaatatttaatatagtgctaacaaatctttttttaaaatattttgagttctaat-ttttttttaaaggatttaaagtctaatctttaacattattttt 24410441  T
Q  275 tgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatat 335  Q
    |  |||  |||||||||||||       ||| |||||||||| ||||| ||||||||||||    
T  24410440 tactcacgtttgttactaatatttttttagaagatttaaagtccaatctttaacattatat 24410380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 24432675 - 24432562
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| |||||||||||  ||||||||||||        |||||||||||||||||||| ||| |||||| |||||    
T  24432675 agaggatttaaagtccaatctttaacattattttttgttcacgtttgttactaatctttttttagaggatttaaagttcaatctttaccattattttttg 24432576  T
Q  340 ctcacgtttgttac 353  Q
    ||||||| ||||||    
T  24432575 ctcacgtctgttac 24432562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 24432738 - 24432622
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||| | |||||||  ||| ||| |||||||||       |||||||||||||| ||||| |||||||||| |||||    
T  24432738 agaggatttaaagtccaatttttaacaatattttttgcccatgttttttactaatatttttttagaggatttaaagtccaatctttaacattattttttg 24432639  T
Q  340 ctcacgtttgttactaa 356  Q
     ||||||||||||||||    
T  24432638 ttcacgtttgttactaa 24432622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 24432979 - 24432924
Alignment:
Q  175 attaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaat 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  24432979 attaatatttaatatagtgctaacaaatatttttctaaaatattttgagtcctaat 24432924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 27023094 - 27023197
Alignment:
Q  186 atatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgttcatattt 285  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||||        ||||||||||||||| ||| ||||||||| |||||||||||| |||    
T  27023094 atatagtgctaacaaatatttttctaaaatattttgagtcttaatctttttat-agaggatttaaagtccaatctttaacattattttttgttcatgttt 27023192  T
Q  286 gttac 290  Q
    |||||    
T  27023193 gttac 27023197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 24410218 - 24410103
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgtt-aacattatattttg 339  Q
    |||||||||||| || | ||||||||| ||||||| |||  |||||||||||||        |||||||||||||| |||| ||| ||||||||||||||    
T  24410218 aggatttaaagtttattctttaacattattttttgctcacgtttgttactaatattttttttagaggatttaaagt-caattgtttaacattatattttg 24410120  T
Q  340 ctcacgtttgttactaa 356  Q
    |||||||||||||||||    
T  24410119 ctcacgtttgttactaa 24410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 26530047 - 26529985
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatat 102  Q
    |||||||||||||||||||| ||||||| |||| ||||||| ||||| ||||| |||||||||    
T  26530047 acctttaaaatatgtggtggaatacttcattgagcaattgaatttaggaattcctgttgatat 26529985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 24409898 - 24409845
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| || ||||||| ||||||||||||||||||||||    
T  24409898 agaggatttaaagtccaatcttttacattattttttgctcacgtttgttactaa 24409845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 24409898 - 24409785
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||| ||||| ||||||| |||  |||||||||||||       |||||||||||| |  |||  ||| |||||| |||||    
T  24409898 agaggatttaaagtccaatcttttacattattttttgctcacgtttgttactaatatttttttagaggatttaaaatcaaatatttaccattattttttg 24409799  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  24409798 ctcacgtttgttac 24409785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 24410282 - 24410231
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttact 354  Q
    |||| ||||||||||||||  |||||||||| |||||||||| |||||||||    
T  24410282 agagtatttaaagttcaatatttaacattattttttgctcacatttgttact 24410231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 24410473 - 24410422
Alignment:
Q  305 aggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||  |||| |||||||||| |||| |||||||||||||||||    
T  24410473 aggatttaaagtctaatctttaacattattttttactcacgtttgttactaa 24410422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 26529029 - 26528974
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    ||||||||||| | ||||||||||||||||||| ||||| |||  |||||||||||    
T  26529029 ttaatatttaaaaaagtgctaacaaatctttttttaaaaaatttggagtcctaatc 26528974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 24432915 - 24432859
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattata---ttttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| ||||||||||    ||||||||||||||||||||||    
T  24432915 agaggatttaaagtccaatctttaacattattattttttgctcacgtttgttactaa 24432859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 27023147 - 27023197
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||| ||||| |||||||||| ||||| ||| |||||||||    
T  27023147 agaggatttaaagtccaatctttaacattattttttgttcatgtttgttac 27023197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 33848532 - 33848578
Alignment:
Q  310 ttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||| ||||| |||| ||||| ||||||||||||||||||||||    
T  33848532 ttaaagtccaatctttaatattattttttgctcacgtttgttactaa 33848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 24410091 - 24410039
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    |||||||||| || ||| ||||||||| ||||| | |||||||||||||||||    
T  24410091 aggatttaaaatccaatctttaacattatttttagctcatatttgttactaat 24410039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 24410379 - 24410351
Alignment:
Q  328 cattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||||||||||||    
T  24410379 cattatattttgctcacgtttgttactaa 24410351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 28257084 - 28257221
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||||||||||||||||||| | ||  ||||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||    
T  28257084 acctttaaaatatgtggtgggatacttccttaagcagctgagtttaggaattcctgttgatataagttatgagtatct-cttcaacctcgttaaatgaca 28257182  T
Q  140 acaaattatattcttctattggaaactgattgataatta 178  Q
    ||||||||| || ||||  || ||||| |||||||||||    
T  28257183 acaaattatgttattctcctgaaaactaattgataatta 28257221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 42773014 - 42773157
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgt-----tgatataagttatgaggatctccttcaacctcgtcaaa 134  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||  ||||||| |     |||||||||||||||| ||  |||||||| ||||||||    
T  42773014 acctttaaaatatatggtggaatacttccttgagcaattgagtttaagaattcatattgatatgatataagttatgagtattcccttcaacttcgtcaaa 42773113  T
Q  135 tgacaacaaattatattcttctattggaaactgattgataatta 178  Q
    |||||||||||||| |||||||  |||||||||||| |||||||    
T  42773114 tgacaacaaattatgttcttctcctggaaactgattcataatta 42773157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 28263140 - 28263320
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |         ||||||||||||||| ||| |||||||||  |||||    
T  28263140 ttaatatttaatatagtgctaacaaatatttttctaaaatattttgagtcctacttttttttttagaggatttaaagtccaatctttaacattagttttt 28263239  T
Q  276 gttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttacta 355  Q
    | |||  ||||||||||||         ||||||||| |||| ||||  ||||| |||||||||||||| |||||||||||    
T  28263240 gctcacgtttgttactaatcttttttttagaggattttaagtccaatatttaactttatattttgctcatgtttgttacta 28263320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 407
Target Start/End: Original strand, 38938168 - 38938393
Alignment:
Q  179 atatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgttttttgtt 278  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||         ||| || |||||||| ||| ||||||| | |||||||||    
T  38938168 atatttaatatagtgctaacaaatctttttctaaaatactttgagtcctaat-atttttttagatga-ttaaagtccaatttttaacaatattttttgtt 38938265  T
Q  279 catatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaa 378  Q
    ||  |||||||||||||       |||||||||||| |  |||  || ||||||| ||||||| ||||||||||||||          ||| ||||||||    
T  38938266 cacgtttgttactaatatttttttagaggatttaaaatctaatatttgacattattttttgctgacgtttgttactaatcttttttttagaggatttaaa 38938365  T
Q  379 gtccaaatctttaacattattttttgctc 407  Q
    |||| ||||||||||||||||||||||||    
T  38938366 gtcc-aatctttaacattattttttgctc 38938393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 407
Target Start/End: Complemental strand, 1197706 - 1197477
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||||        ||| ||||||||||  ||| ||||||| | ||||||    
T  1197706 ttaatgtttaatatagccctaacaaatctttttctaaaatattttgagtcctaatcctttttttagatgatttaaagttcaatctttaacaatatttttt 1197607  T
Q  276 gttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagattt 375  Q
    | |||  ||| ||||||||        | |||||||||||| ||||  |||||||||| ||||||||||||||||||||||          ||| |||||    
T  1197606 gctcacgtttattactaattattttttaaaggatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagaggattt 1197508  T
Q  376 aaagtccaaatctttaacattattttttgctc 407  Q
    ||||| | ||||||||||||||||||||||||    
T  1197507 aaagttc-aatctttaacattattttttgctc 1197477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 42774890 - 42775009
Alignment:
Q  176 ttaatatttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatcnnnnnnnnagaggatttaaagtctaatatttaacattgtttttt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||        ||||||||||||||| |||  ||| |||| |||||     
T  42774890 ttaatatttaatatagtgctaacaaatctttttctaaaatattttgagttgtaatcttttttctagaggatttaaagtccaatcattaccattatttttc 42774989  T
Q  276 gttcatatttgttactaata 295  Q
    | |||| |||||||||||||    
T  42774990 gctcatgtttgttactaata 42775009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 38938290 - 38938457
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatatttt 338  Q
    |||||||||||| |||||||||| ||||| ||||||| | |  ||||||||||||         |||||||||||||| ||||| |||||||||| ||||    
T  38938290 agaggatttaaaatctaatatttgacattattttttgctgacgtttgttactaatcttttttttagaggatttaaagtccaatctttaacattatttttt 38938389  T
Q  339 gctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    ||||||||||||||||||          |||||||||||||||| |||||||| || ||||||||||||    
T  38938390 gctcacgtttgttactaatattatttttagaagatttaaagtcc-aatctttaccactattttttgctc 38938457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 1197577 - 1197463
Alignment:
Q  242 aggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn-agaggatttaaagttcaatcgttaacattatattttgc 340  Q
    ||||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||         |||||||||||||||||||| |||||||||| ||||||    
T  1197577 aggatttaaagtccaat-tttaacattattttttgctcacgtttgttactaatcttttttttagaggatttaaagttcaatctttaacattattttttgc 1197479  T
Q  341 tcacgtttgttactaa 356  Q
    ||||||||||||||||    
T  1197478 tcacgtttgttactaa 1197463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 3160111 - 3160166
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaata 295  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  3160111 agaggatttaaagtctaatttttaacattattttttgctcatatttgttactaata 3160166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 42775083 - 42775198
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaa--tannnnnnnagaggatttaaagttcaatcgttaacattatattt 337  Q
    ||||||||||||||  ||| ||||||||| |||||||||||| |||||||||||  |        |||||||||||||| ||||| |||||||||| |||    
T  42775083 agaggatttaaagttcaatctttaacattattttttgttcatgtttgttactaatctttttttgtagaggatttaaagtccaatctttaacattattttt 42775182  T
Q  338 tgctcacgtttgttac 353  Q
    ||||||||||| ||||    
T  42775183 tgctcacgtttattac 42775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 28263460 - 28263573
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| |||| || | ||||||  |||  ||||||||||||        |||||||||||||| ||||| |||||||||| |||||    
T  28263460 agaggatttaaagtccaatctttagcaatattttttactcacgtttgttactaatctttttttagaggatttaaagtccaatctttaacattattttttg 28263559  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  28263560 ctcacgtttgttac 28263573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 3159800 - 3159849
Alignment:
Q  182 tttaatatagtgctaacaaatctttttctaaaatattctgagtcctaatc 231  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  3159800 tttaatatagtcataacaaatctttttctaaaatattttgagtcctaatc 3159849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 28222417 - 28222364
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||||||| ||||||| | ||||||||||||    
T  28222417 agaggatttaaagttcaatctttaacattattttttgcttaagtttgttactaa 28222364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 28263204 - 28263257
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||||||  ||||||||||||||||||||||    
T  28263204 agaggatttaaagtccaatctttaacattagtttttgctcacgtttgttactaa 28263257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 42775083 - 42775187
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnncc-agaagatttaaagtccaaatctttaacattatttt 401  Q
    |||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||           ||| |||||||||||||| ||||||||||||||||    
T  42775083 agaggatttaaagttcaatctttaacattattttttgttcatgtttgttactaatctttttttgtagaggatttaaagtccaa-tctttaacattatttt 42775181  T
Q  402 ttgctc 407  Q
    ||||||    
T  42775182 ttgctc 42775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 28604573 - 28604521
Alignment:
Q  304 gaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||||| |||||||| | ||||||||||| ||||||||||    
T  28604573 gaggatttaaagttcaatctttaacattttgttttgctcacggttgttactaa 28604521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 14655469 - 14655507
Alignment:
Q  180 tatttaatatagtgctaacaaatctttttctaaaatatt 218  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14655469 tatttaatatagtgctaataaatctttttctaaaatatt 14655507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 28263401 - 28263451
Alignment:
Q  306 ggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||||||    
T  28263401 ggatttaaagttcaatctttaacattattttttggtcacgcttgttactaa 28263451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 28263460 - 28263562
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttt 402  Q
    |||||||||||||| ||||| ||| || ||| |||| |||||||||||||||||          ||| |||||||||||| |||||||||||||||||||    
T  28263460 agaggatttaaagtccaatctttagcaatattttttactcacgtttgttactaatctttttt-tagaggatttaaagtcc-aatctttaacattattttt 28263557  T
Q  403 tgctc 407  Q
    |||||    
T  28263558 tgctc 28263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 3159942 - 3160038
Alignment:
Q  260 tttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||| ||||||| |||| ||||||| ||||        ||||||||| | || ||||| |||||||||| ||||||||| ||||||||||||    
T  3159942 tttaacattattttttgctcatgtttgttattaatctgtttttagaggattttatgtccaatctttaacattattttttgctcatgtttgttactaa 3160038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 14655526 - 14655577
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttact 354  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||||||||||    
T  14655526 agaggatttaaaatccaatcttcaacattattttttgctcacgtttgttact 14655577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 3159863 - 3159912
Alignment:
Q  307 gatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||||  |||| |||||| ||| ||||||||||||||||||||||    
T  3159863 gatttaaagtataatctttaacaatattttttgctcacgtttgttactaa 3159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 14655581 - 14655634
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| |||||||||  |||| |||||||||| |||||||||||||| |||||||    
T  14655581 agagaatttaaagtcaaatccttaacattattttttgctcacgtttattactaa 14655634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 42774954 - 42775007
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| ||| |||||| ||| ||||| ||||||||||||    
T  42774954 agaggatttaaagtccaatcattaccattatttttcgctcatgtttgttactaa 42775007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 49591 - 49483
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    ||||||||||||||| | ||||||||||||| | ||||||||||||  ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  49591 acctttaaaatatgttgagggatacttccttaagcaattgagtttaagaattcatgttgatataaattatgagtatccccttcaacctcgtcaaatgaca 49492  T
Q  140 acaaattat 148  Q
    |||||||||    
T  49491 acaaattat 49483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 48856 - 48691
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  |||||||||||||       ||||||||||||||  |||  |||||| ||| |||||    
T  48856 agaggatttaaagtcaaatctttaacattattttttgctcacgtttgttactaata-ttttttagaggatttaaagtcgaatgtttaacaatattttttg 48758  T
Q  340 ctcacgtttgttactaannnnnnnnccagaagatttaaagtccaaatctttaacattattttttgctc 407  Q
    |||||||||||||||||          ||| |||||||||||| ||||||||||| ||||||||||||    
T  48757 ctcacgtttgttactaatcatttttttagaggatttaaagtcc-aatctttaacaatattttttgctc 48691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 48794 - 48677
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat-annnnnnnagaggatttaaagttcaatcgttaacattatatttt 338  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||  |||||||||||| |       |||||||||||||| ||||| |||||| ||| ||||    
T  48794 agaggatttaaagtcgaatgtttaacaatattttttgctcacgtttgttactaatcatttttttagaggatttaaagtccaatctttaacaatatttttt 48695  T
Q  339 gctcacgtttgttactaa 356  Q
    ||||| ||||||||||||    
T  48694 gctcatgtttgttactaa 48677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 48479 - 48429
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttac 353  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  48479 agaggatttaaagttcaatctttaacattattttttgctcatgtttgttac 48429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 48540 - 48487
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||    
T  48540 agaggatttaaagttcaatctttaacaatattttttgctcacgttagttactaa 48487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 48604 - 48551
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||| ||||| |||||| ||  ||||||||||||||||||||||    
T  48604 agaggatttaaagtccaatctttaacaataatttttgctcacgtttgttactaa 48551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 48730 - 48676
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaat 294  Q
    ||||||||||||||| ||| ||||||| | ||||||| |||| ||||||||||||    
T  48730 agaggatttaaagtccaatctttaacaatattttttgctcatgtttgttactaat 48676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 1815 - 1707
Alignment:
Q  40 acctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgaca 139  Q
    |||||||||||||||||||| | |||||||||| || |||||||||| ||||||||||||||||||||||||| ||| |||||||| || | ||||||||    
T  1815 acctttaaaatatgtggtggaaaacttccttgagcagttgagtttaggaattcatgttgatataagttatgagtatccccttcaacttcattaaatgaca 1716  T
Q  140 acaaattat 148  Q
    | |||||||    
T  1715 aaaaattat 1707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 3125 - 3178
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  3125 agagaatttaaagttcaatctttaacattattttttgctcacgtttgttactaa 3178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 16872 - 16984
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnnagaggatttaaagttcaatcgttaacattatattttg 339  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||  ||||||||||||        |||||||||||||| ||||| |||  ||||| |||||    
T  16872 agaggatttaaagtccaatctttaacattattttttgatcacgtttgttactaat-tttttttagaggatttaaagtccaatctttactattattttttg 16970  T
Q  340 ctcacgtttgttac 353  Q
    ||||||||||||||    
T  16971 ctcacgtttgttac 16984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 16807 - 16925
Alignment:
Q  240 agaggatttaaagtctaatatttaacattgttttttgttcatatttgttactaatannnnnnn--agaggatttaaagttcaatcgttaacattatattt 337  Q
    ||||||||||| ||| ||| ||||||| | ||||||| |||| ||||| |||||||         |||||||||||||| ||||| |||||||||| |||    
T  16807 agaggatttaacgtccaatttttaacaattttttttgctcatgtttgtcactaatatatttttttagaggatttaaagtccaatctttaacattattttt 16906  T
Q  338 tgctcacgtttgttactaa 356  Q
    || ||||||||||||||||    
T  16907 tgatcacgtttgttactaa 16925  T

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Target: scaffold0123; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 16744 - 16797
Alignment:
Q  303 agaggatttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    |||||||||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  16744 agaggatttaaagttcaatctttaacatgactttttgctcacgtttgttactaa 16797  T

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Target: scaffold0123; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 16642 - 16692
Alignment:
Q  245 atttaaagtctaatatttaacattgttttttgttcatatttgttactaata 295  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||    
T  16642 atttaaagtccaatatttaacattattttttgctcatgtttgttactaata 16692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 16642 - 16690
Alignment:
Q  308 atttaaagttcaatcgttaacattatattttgctcacgtttgttactaa 356  Q
    ||||||||| ||||  |||||||||| ||||||||| ||||||||||||    
T  16642 atttaaagtccaatatttaacattattttttgctcatgtttgttactaa 16690  T

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Target: scaffold0077 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 43430 - 43555
Alignment:
Q  42 ctttaaaatatgtggtgggatacttccttgaacaattgagtttagaaattcatgttgatataagttatgaggatctccttcaacctcgtcaaatgacaac 141  Q
    |||||||||||||||||| | ||||||     |||||| ||||| | |||| ||||||||||||||||| |  || || |||||||||||||||||||      
T  43430 ctttaaaatatgtggtggtaaacttccagttgcaattgtgtttaaatattcctgttgatataagttatgcgtgtcaccctcaacctcgtcaaatgacatt 43529  T
Q  142 aaattatattcttctattggaaactg 167  Q
    | ||||| ||||||| | ||||||||    
T  43530 agattatgttcttctctaggaaactg 43555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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