View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001_low_1 (Length: 490)
Name: NF1001_low_1
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 43817817 - 43818296
Alignment:
| Q |
1 |
aattccctaatcgtcacgtttttaatgaaaacaaatcagattaggaaatgtatgattggtgtttcttttttctatgttggagaaatgagaaataatgaaa |
100 |
Q |
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| T |
43817817 |
aattccctaatcgtcacgtttttaatgaaaacaaatcagattaggaaatgaatgattggtgtttcttttttctatgttggagaaatgagaaataatgaaa |
43817916 |
T |
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| Q |
101 |
actaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatannnnnnngggtttgatctaccttaaaggtagat |
200 |
Q |
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| T |
43817917 |
actaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatatttttttgggtttgatctaccttaaaggtagat |
43818016 |
T |
|
| Q |
201 |
tgggagagacggttaccaaaccctcaggtgaataattttcttcgttaattttataacataaataatatctttttagattcttcttatttgcagttagata |
300 |
Q |
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| T |
43818017 |
tgggagagacggttaccaaaccctcaggtgaataattttcttcgctaattttataacataaataatatctttttagattcttcttatttgcagttagata |
43818116 |
T |
|
| Q |
301 |
agagagaaaaacgatcattagagaatatgattattaatggtggaattaatgaactggcttagattttattttattccttatttgggttaccggtataaag |
400 |
Q |
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| T |
43818117 |
agagagaaaaacgatcattagagaatatgattattaatggtggaattaatgaactggcttagattttattttattccttatttgggttaccggtataaag |
43818216 |
T |
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| Q |
401 |
tagttactatgttttctttcatgtttaacacatttatttggggacaatactactttggaccatttcgttgttggcctatg |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43818217 |
tagttactatgttttctttcatgtttaacacatttatttggggacaatactactttggaccatttcgttgttggtctatg |
43818296 |
T |
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