View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1001_low_3 (Length: 250)
Name: NF1001_low_3
Description: NF1001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1001_low_3 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 44792917 - 44793103
Alignment:
| Q |
63 |
attagttaatattggtctaaaaacaaaaagaagatgatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgacc |
162 |
Q |
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| T |
44792917 |
attagttaatattggta-aaaaacaaaaagaagatgatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgacc |
44793015 |
T |
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| Q |
163 |
aggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaactcctgaggcaattcatcgtctaccattgacgatgct |
250 |
Q |
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| T |
44793016 |
aggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccagaaactcctgaggcaattcatcgtctaccattgacgatgct |
44793103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 44797855 - 44797984
Alignment:
| Q |
114 |
tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaa |
213 |
Q |
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| T |
44797855 |
tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagatgttgcaaaaa |
44797954 |
T |
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| Q |
214 |
ctcctgaggcaattcatcgtctaccattga |
243 |
Q |
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| T |
44797955 |
ctttggaggaaattcatcatctaccgttga |
44797984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 44801250 - 44801332
Alignment:
| Q |
114 |
tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaag |
196 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaag |
44801332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 44789413 - 44789509
Alignment:
| Q |
108 |
gtaggatacgaacgagtaaacgtggaggtatgttcatt-gagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat |
203 |
Q |
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| T |
44789413 |
gtaggatacgaacgagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
44789509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 44805742 - 44805843
Alignment:
| Q |
114 |
tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgttccaaaaa |
213 |
Q |
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| T |
44805742 |
tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagatgttccagaaa |
44805841 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
44805842 |
ct |
44805843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 44787134 - 44787274
Alignment:
| Q |
98 |
gatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaagg |
197 |
Q |
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| T |
44787134 |
gatgaaaagagtaagatacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacga |
44787233 |
T |
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| Q |
198 |
ttagatgttccaaaaactcctgaggcaattcatcgtctacc |
238 |
Q |
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| T |
44787234 |
ctagatgtcccaaaaactcctgaggcaattcattgtctacc |
44787274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 44784308 - 44784350
Alignment:
| Q |
113 |
atacgaacgagtaaacgtggaggtatgttcattgagaagacaa |
155 |
Q |
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| T |
44784308 |
atacgaacgagtaaacgtggaggtatcttcattgagaagacaa |
44784350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 16504 - 16541
Alignment:
| Q |
28 |
aaactattataagctttggatatacttctacaaatatt |
65 |
Q |
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| T |
16504 |
aaacttttataagctttggatgtacttctacaaatatt |
16541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 8425146 - 8425109
Alignment:
| Q |
28 |
aaactattataagctttggatatacttctacaaatatt |
65 |
Q |
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| T |
8425146 |
aaacttttataagctttggatgtacttctacaaatatt |
8425109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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