View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1002-Insertion-1 (Length: 881)
Name: NF1002-Insertion-1
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 2325987 - 2325517
Alignment:
| Q |
7 |
aaaaaagacatttccaagggctcaactttttgatgtttaatttagggtttgaacggatgataaataaagcatgataaataattgnnnnnnnnnnnnna-- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2325987 |
aaaaaagacatttccaagggctcaactttttgatgtttaatttagggtttgaacggaagataaataaagtatgataaataattgtttttttttttttttt |
2325888 |
T |
|
| Q |
105 |
-aaagatgataaataactgttgtatttaggaattgagttcgacttcttccaaagagtttgcccttatatgaaattcattaatcatttaagtctaatcagt |
203 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2325887 |
gaaggatgataaataattgttgtatttaggaattgagttcgacttcttccaaagagtttgctcttatatgaaactcatttatcatttaagtctaatcagt |
2325788 |
T |
|
| Q |
204 |
ttgtaatatctatgatttaatggaataaatagcaatatgtacataccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2325787 |
ttgtaatatctatgatttaatggaataaatagcaatatgtacataccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaa |
2325688 |
T |
|
| Q |
304 |
atctgcaagatttctttgcaagtcagatttggcatcatgactgaagcaagctgcatgggacatccttaaatattgaaatcaattaatggatgcttaaaac |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2325687 |
atctgcaagatttctttgcaagtcagatttggcatcatgactgaagcaagctgcatgggacatccttaaatattgaaatcaattaatggatgattaaaac |
2325588 |
T |
|
| Q |
404 |
ctcgtattcgtcaacttgtttttgtcggggaaatataatgtgtctataaaggtatttatagtaaactctttt |
475 |
Q |
| |
|
||| | || |||||||||||||||| |||| || | | ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2325587 |
ctcttcttggtcaacttgtttttgtaggggcaa-agagtgtgtctataaaggtatttatagcaaactttttt |
2325517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 551 - 881
Target Start/End: Complemental strand, 2324087 - 2323767
Alignment:
| Q |
551 |
ttgatgtagctagtaaatggttgttttaagattgattctgcaatgtcatctaatcctataatagtggttgtgtcacatcagcaaaaaa--gctacaaaaa |
648 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
2324087 |
ttgatgtagctaggaaatggttgttttaagattaattctgcaatatcatctaatcctataatagtcgttgtgtcacatcagtaaaaaaaagctacaaaaa |
2323988 |
T |
|
| Q |
649 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacatccattttttatgcttttaattttcgctcgagctagaaaaatttcttaaag |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2323987 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacattcattttttatgcttttaattttcgctcgagctagaaaaatttcttaaag |
2323888 |
T |
|
| Q |
749 |
atggcgagcgaaatacaaccaattgaaccaaattgtatttgttaatagaatccactagctatagcataaaggggttttcatgtccaattgcat-gttttt |
847 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
2323887 |
gtggcgagcgaaatacaacca----------attgtatttgttaatagaatccactagctatagcataaa-gggttttcatgtccaattgcatagttttt |
2323799 |
T |
|
| Q |
848 |
taatccatctttaatcaaagtctctttgtttaaa |
881 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |
|
|
| T |
2323798 |
taatccatc-ttaatc-aagtctctttgtttaaa |
2323767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 765 - 802
Target Start/End: Complemental strand, 2344895 - 2344858
Alignment:
| Q |
765 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
802 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344895 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
2344858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 14268022 - 14268098
Alignment:
| Q |
246 |
ataccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgc |
322 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| || ||||||| | |||||| ||||||| |||||||||||| |
|
|
| T |
14268022 |
ataccatagattctgaagcatattgaatgaaatattccccccaaatgttagggtgataatctgccagatttctttgc |
14268098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 25791742 - 25791651
Alignment:
| Q |
244 |
acataccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgcaagtcagatttgg |
335 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||||||||||||| |
|
|
| T |
25791742 |
acataccatagattctgaagcatattgaatgaaataatctccccaaacgctaggttgataatctgcaacatttctacgcaagtcagatttgg |
25791651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 41352694 - 41352780
Alignment:
| Q |
247 |
taccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgcaagtcagattt |
333 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||||||| |||||| ||||| |||| |||||| || | ||||||||| |
|
|
| T |
41352694 |
taccatagattctgaagcatattgaaggaaataatctccccaaacgttagggtgaaaatcggcaacatttctatgaaggtcagattt |
41352780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 31158127 - 31158039
Alignment:
| Q |
247 |
taccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgcaagtcagatttgg |
335 |
Q |
| |
|
||||| |||||| ||| ||||| ||| |||||||||||||||||||| ||| | ||||||||| |||||| |||||||||||||||| |
|
|
| T |
31158127 |
taccatagattcagaagcatatcgaaggaaataatctccccaaacgctaggtttataatctgcaacatttctatgcaagtcagatttgg |
31158039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 31198180 - 31198091
Alignment:
| Q |
247 |
taccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgcaagtcagatttggc |
336 |
Q |
| |
|
||||| |||||||||| |||| ||| |||||||||||||||||||| ||| || ||||| |||| |||||| |||| |||||| ||||| |
|
|
| T |
31198180 |
taccatagattctgaagcatagcgaaggaaataatctccccaaacgctaggttgaaaatcagcaacatttctatgcatgtcagaattggc |
31198091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 25831888 - 25831813
Alignment:
| Q |
247 |
taccacagattctgaatcatattgaatgaaataatctccccaaacgcaagggtggaaatctgcaagatttctttgc |
322 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||| || ||||| || |||||||||||||||||| |
|
|
| T |
25831888 |
taccatagattctgaagcatattgaatgaaatattctccccagacatttgggtgaaattctgcaagatttctttgc |
25831813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University