View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-10 (Length: 701)
Name: NF1002-Insertion-10
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 38879113 - 38879528
Alignment:
| Q |
7 |
acataacaatccgaactcaaacaacattaatagtaagttaatggttatttaatttctttcatttacannnnnnnnnn-ggatagacaaatgctggtaagt |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
38879113 |
acataacaatccgaactcaaacaacattaatagtaagttaatggttatttaatttttttcatttaattttttttttttggatagacaaatgctagtaagt |
38879212 |
T |
|
| Q |
106 |
tagttgttatgttagtttcttaggtttgaacctttgttctccttaaaactcattgtctgttagctcagcaactgagttacctacatgggaccaaagatac |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
38879213 |
tagttgttatgttagtttcttaggtttgaacctttgttctccttaaaactcattgtctgttagctcagctactgagttacctgcatgggaccaaagatac |
38879312 |
T |
|
| Q |
206 |
ctaaagcatgcttcatccactttcagtctagttattggattcaggagcataatttaaccaatatacacagtacgaatcctttatggtgcacttcagtaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38879313 |
ctaaagcatgcttcatccactttcagtctagttattggattcaggaacataatttaaccaatatacacagtatgaatcctttatggtgcacttcagtaaa |
38879412 |
T |
|
| Q |
306 |
ttttacaaatcatgtaaaattttgggaacaattttaataattacctttttataaacaagctcccgccaatcgttatttgcatctgttcctgcttcaagaa |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38879413 |
ttttacaaatcatgtaaaattttgggaacaattttaataattacctttttataaacaacctcccgccaatcgttatttgcatctgttcctgcttcaagaa |
38879512 |
T |
|
| Q |
406 |
atagaatgatcagaac |
421 |
Q |
| |
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|||||||||||||||| |
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| T |
38879513 |
atagaatgatcagaac |
38879528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 490 - 701
Target Start/End: Original strand, 38879534 - 38879745
Alignment:
| Q |
490 |
ttgttttttggaaattagaagcttctaaaattactagtggaaattttattatttcaaaaatgtttctctcgcactattgtagaatccttgtttagattaa |
589 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38879534 |
ttgttttttagaaattagaagcttctaaaattactagtggaaattttattatttcaaaaatgtttctctcgcactattgtagaatccttgtttagattaa |
38879633 |
T |
|
| Q |
590 |
aaagtaccttagcaattagcattactagcgaaacatatcaggatcaaccgattaatgaaaaccaattctaattcctaaaatactcttaaaatatttttag |
689 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38879634 |
aaagtaccttagcaattagcattactagcgaaacatatcaggatcaaccgattaatgaaaaccaattctaattcctaaaatactcttaaaatatttttag |
38879733 |
T |
|
| Q |
690 |
atacaaagttga |
701 |
Q |
| |
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||| |||||||| |
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| T |
38879734 |
ataaaaagttga |
38879745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 347 - 658
Target Start/End: Original strand, 16618980 - 16619281
Alignment:
| Q |
347 |
tacctttttataaacaagctcccgccaatcgttatttgcatctgttcctgcttcaagaaatagaatgatcagaacaataatacgtccttcgagataaaat |
446 |
Q |
| |
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|||| ||||||||||| |||| |||| || | |||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||| |
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|
| T |
16618980 |
tacccttttataaacatcctcctgccagtcaatgtttgcatctgttcctgcttcaagaaatagaatgatcagaataatagcacatcctcaaggataaaat |
16619079 |
T |
|
| Q |
447 |
ctaatattggtctaccgaaaattaacattatcgaactaaggtcttgttttttggaaattagaagcttctaaaattactagtggaaattttattatttcaa |
546 |
Q |
| |
|
| ||| |||||| | | | ||||||||||| |||||| ||||||| || ||||||||| |||||||||| | || | | |||| || | ||| ||| |
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|
| T |
16619080 |
caaatgttggtcaatcaagcattaacattattgaactatggtcttg--ttgtggaaattacaagcttctaagactatcattagaaa-ttaaccattgcaa |
16619176 |
T |
|
| Q |
547 |
aaatgtttctctcgcactattgtagaatccttgtttagattaaaaagtaccttagcaattagcattactagcgaaacatatcaggatcaaccgattaatg |
646 |
Q |
| |
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| |||| || || |||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||| || ||||||||||||| |
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|
| T |
16619177 |
atatgtatccctagcactattgtagaatccttgtttagactaaagagtatc-------ttagcattactagtgaaacatatcaagaccaaccgattaatg |
16619269 |
T |
|
| Q |
647 |
aaaaccaattct |
658 |
Q |
| |
|
||||| ||||| |
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|
| T |
16619270 |
taaacccattct |
16619281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 470 - 647
Target Start/End: Complemental strand, 15110098 - 15109932
Alignment:
| Q |
470 |
aacattatcgaactaaggtcttgttttttggaaattagaagcttctaaaattactagtggaaattttattatttcaaaaatgtttctctcgcactattgt |
569 |
Q |
| |
|
|||||||| |||||| ||||||||| | |||||||| ||||||||||||||| | || |||||| | ||| |||| |||| ||||| |||| ||||| |
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|
| T |
15110098 |
aacattattgaactatggtcttgttgt--ggaaattacaagcttctaaaattattggtagaaatta-accattgcaaatatgtatctctagcac-attgt |
15110003 |
T |
|
| Q |
570 |
agaatccttgtttagattaaaaagtaccttagcaattagcattactagcgaaacatatcaggatcaaccgattaatga |
647 |
Q |
| |
|
||| |||||||||||| |||| |||| ||||||| ||||||| |||||||||||||||||||||| |||||| |
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|
| T |
15110002 |
agattccttgtttagactaaagagtatcttagca-------ttactagtgaaacatatcaggatcaaccgaataatga |
15109932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 603
Target Start/End: Original strand, 16077588 - 16077722
Alignment:
| Q |
468 |
ttaacattatcgaactaaggtcttgttttttggaaattagaagcttctaaaattactagtggaaattttattatttcaaaaatgtttctctcgcacta-t |
566 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||| |||||| |||| || ||||||| | || ||||||||||||| ||| | |||||| | |
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|
| T |
16077588 |
ttaacattatttaactaaggtattgtttt--ggaaattagaaggttctaacattattactggaaatataataatttcaaaaatgtatctttagcactatt |
16077685 |
T |
|
| Q |
567 |
tgtagaatccttgtttagattaaaaagtaccttagca |
603 |
Q |
| |
|
||| || ||||| ||||||||| | |||| ||||||| |
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|
| T |
16077686 |
tgtggagtccttatttagattatagagtatcttagca |
16077722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 603
Target Start/End: Original strand, 16071365 - 16071473
Alignment:
| Q |
495 |
ttttggaaattagaagcttctaaaattactagtggaaattttattatttcaaaaatgtttctctcgcactattgtagaatccttgtttagattaaaaagt |
594 |
Q |
| |
|
||||||||||| ||| |||||| |||| || ||||||||| | ||||||||||||| ||| | ||||||||||||||||||||| |||| ||| ||| |
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|
| T |
16071365 |
ttttggaaattcaaaggttctaatattattattggaaatttagtaatttcaaaaatgtatctttaccactattgtagaatccttgttaagatgaaagagt |
16071464 |
T |
|
| Q |
595 |
accttagca |
603 |
Q |
| |
|
| ||||||| |
|
|
| T |
16071465 |
atcttagca |
16071473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 649
Target Start/End: Complemental strand, 15622202 - 15622158
Alignment:
| Q |
605 |
ttagcattactagcgaaacatatcaggatcaaccgattaatgaaa |
649 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15622202 |
ttagcgttactagtgaaacatatcaggatcaaccgattaatgaaa |
15622158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 649
Target Start/End: Complemental strand, 15645971 - 15645927
Alignment:
| Q |
605 |
ttagcattactagcgaaacatatcaggatcaaccgattaatgaaa |
649 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15645971 |
ttagcgttactagtgaaacatatcaggatcaaccgattaatgaaa |
15645927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 41640513 - 41640553
Alignment:
| Q |
98 |
tggtaagttagttgttatgttagtttcttaggtttgaacctt |
139 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
41640513 |
tggtaagttagtggttatgttagtttc-taggtttgaacctt |
41640553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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