View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-12 (Length: 627)
Name: NF1002-Insertion-12
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 599
Target Start/End: Original strand, 35817486 - 35818078
Alignment:
| Q |
7 |
agtcatggcttatttcatccaaagttttctttggtttctgatggatgacctagataaaggtaatgaaaaataagtttaccatactttcccatctctgacc |
106 |
Q |
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| T |
35817486 |
agtcatggcttatttcatccgaagttttctttggtttctgatggatgacctaaataaaggtaatgaaaaataagtttaccatactttcccatctctgacc |
35817585 |
T |
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| Q |
107 |
actagaaggacaaacaaaatgcnnnnnnnnn--actagagaaaataatgctgctatgatagaagagaatggaaaattggggactggttagataactaaat |
204 |
Q |
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| T |
35817586 |
attagaaggacaaacaaaatgctttttttttttactagagaaaataatgctgctatgatagaagagaatggaaaattggggactggttagataactaaat |
35817685 |
T |
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| Q |
205 |
aggtgtgaggccaggnnnnnnnnnnnnnnnnnnnnnaaaagcatgtgaggccatggtaccattgagatttgttagcattgagtaaagtgaacaaataatc |
304 |
Q |
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| T |
35817686 |
aggtgtgaggccaggttttttttctctttgttttttaaaagcatgtgaggccatggtaccattgagatttgttagcattgagtaaagtgaacaaatattc |
35817785 |
T |
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| Q |
305 |
tgtagtaagggcaaaaccttcaaagataacccattctcctattcttaaccatttaacaaattattcctaatttctgtttccatcatttttccatttctcc |
404 |
Q |
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| T |
35817786 |
tgtagtaagggcaaaaccttcaaagataacccattctcctattcttaaccatttaacaaattattcctaatttctgtttccatcatttttccatttctcc |
35817885 |
T |
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| Q |
405 |
tctctacgttcctaatatatgcaagatggtatctagtgaaaaatatagataccagaaatccaatagcttgtctaatatgttcgagctcatcccagtccga |
504 |
Q |
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| T |
35817886 |
tctctacgttcctaatctatgcaagatggtatctagtgaaaaatatagataccagaaatccaatagcttgtctaatatgttcgagctcatcccagtccga |
35817985 |
T |
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| Q |
505 |
acctgtgtaccacatatatattttttgttttcgagaaaggataggtgggttaatatgtacctattaaaagacctacatgcaataccagcagtgtt |
599 |
Q |
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| T |
35817986 |
acctgtgtaccac--attttttttttgttttcgagaaaggataggtgggttagtatgtacctattaaaagacctacatgcaatatcagcagtgtt |
35818078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 499
Target Start/End: Complemental strand, 47703641 - 47703591
Alignment:
| Q |
449 |
atagataccagaaatccaatagcttgtctaatatgttcgagctcatcccag |
499 |
Q |
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| T |
47703641 |
atagataccagaaatccaatagcttgcctaatatgtttgagctcatcccag |
47703591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 47703776 - 47703726
Alignment:
| Q |
8 |
gtcatggcttatttcatccaaagttttctttggtttctgatggatgaccta |
58 |
Q |
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| T |
47703776 |
gtcatgacttatttcgtccaacgttttctttggtttttgatgtatgaccta |
47703726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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