View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-13 (Length: 602)
Name: NF1002-Insertion-13
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 4 - 602
Target Start/End: Original strand, 31546011 - 31546614
Alignment:
| Q |
4 |
aacagctatagcttataagagattagataagcatgaagtcgaatcataataaaaaagaaaagataactacggaattggcagtcaaagaataagtgtatat |
103 |
Q |
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| T |
31546011 |
aacagctatagcttataagagattagataagcatgaagtcgaatcataataaaaaagaaaagataactacggaattggcagtcaaagaataagtgtatat |
31546110 |
T |
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| Q |
104 |
gtatgattcnnnnnnnnnnnn-----aattttaatattaaagaaacgtctgatgcatattttttaatacaacttgagttgtttcaatttgctgcttaact |
198 |
Q |
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| T |
31546111 |
gtatgatgcttttttcttttttttttaattttaatattaaagaaacatctgatgcatattttctaatacaacttgagttgtttcaatttgctgcttaact |
31546210 |
T |
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| Q |
199 |
gtgatcttatcctttttgtcaataaaaactgtgaccttatccaatcaatcattggaagtgacaaaatcttcctaggattagtctttctttttccagtttt |
298 |
Q |
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| T |
31546211 |
gtgatcttatcctttttgtcaataaaaactgtgaccttatccaatcaatcattggaagtgacaaaatattcctaggattagtctttctttttccagtttt |
31546310 |
T |
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| Q |
299 |
tgaatccttggtttatttatttgaggtcaaacatttttcaagatcattggattttgatattttgagaatgaattgattttttcaagatcatacacaaatt |
398 |
Q |
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| T |
31546311 |
tgaatccttggtttatttatttgaggtcaaacatttttcaagatcattggattttgatattttgagaatgaattgattttttcaagatcatacacaaatt |
31546410 |
T |
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| Q |
399 |
cattttcaatttatataagagaaatgttgtaaaataaatacatagcattgagcagaataacaaattgaactattagaatggcttttcaactaaataatat |
498 |
Q |
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| T |
31546411 |
ccttttcaatttatataagagaaatgttgtaaaataaatacatagcattgagcagaataacaaattgaactattagaatggcttttcaactaaataatat |
31546510 |
T |
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| Q |
499 |
actcaataacttcatatacaagctacaagccgttgttagaattaatcaaactcattttcatttttattgtggtactcactcatgcacttgactgccacaa |
598 |
Q |
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| T |
31546511 |
actcaataacttcatatacaagctacaagccgttgttagaattaatcaaactcattttcatttttattgtggtactcactcatgcacttgactgccacaa |
31546610 |
T |
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| Q |
599 |
atgg |
602 |
Q |
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| T |
31546611 |
atgg |
31546614 |
T |
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