View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1002-Insertion-14 (Length: 585)
Name: NF1002-Insertion-14
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-14 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 173 - 585
Target Start/End: Complemental strand, 38411471 - 38411067
Alignment:
| Q |
173 |
ccttatcaagctatatattcaaaaatggttcatccttatcaatttcatgttcaatactaacaaggtatataataggagtacagcaattcattttcattga |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38411471 |
ccttatcaagctatatattcaaaaatggttcatccttatcaatttcatgttcaatactaacaagatatataacaggagtacagcaattcattttcattga |
38411372 |
T |
|
| Q |
273 |
aatttgtttgatattcaattgctttaccaaaacattgatatcctcctataatatagaaaagcatgatgagaagcccttaacttttcttccgttacttata |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38411371 |
aatttgtttgatattcaattgctttaccaaaacattgatatccccctataatatagaaaagcatgatgagaagcccttaacttttcttccgttacttata |
38411272 |
T |
|
| Q |
373 |
gattggtcatttcccttaatttgaatgacaaaagctgatggggatacgagggcgcgacaacacgatgacataggtaggaccagtagagaaac----taag |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
38411271 |
gattggtcatttcccttaatttgaatgacaaaagctgatggggatacgagggcacgacaacacgaagacatgggtaggaccagtagagaaactaattaag |
38411172 |
T |
|
| Q |
469 |
gtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtgaagagagatgacaagttttggtttggagggagaatagaaaataacatttgg |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38411171 |
gtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtg------------aagttttggtttggagggagaatagaaaataacatttgg |
38411084 |
T |
|
| Q |
569 |
ttactaataaaatgaca |
585 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38411083 |
ttactaataaaatgaca |
38411067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 38411609 - 38411499
Alignment:
| Q |
36 |
ctcgcagtcggaacggcattaacatcttgtcttgctaagaaatgggattgatcaggatatgttgttatttatagaaggatgaaagcatgattatgattca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38411609 |
ctcgcagtcggaacggcattaacatcttgtcttgctaagaaatgggattgatcaggatatgttgttatttatagaaggatgaaagcatgattatgattca |
38411510 |
T |
|
| Q |
136 |
cttcatcgtga |
146 |
Q |
| |
|
||||||||||| |
|
|
| T |
38411509 |
cttcatcgtga |
38411499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 35274646 - 35274701
Alignment:
| Q |
305 |
cattgatatcctcctataatatagaaaagcatgatgagaagcccttaacttttcttc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35274646 |
cattgatatcctcctataatatagaaaagcatgatgagaagcccttaa-ttttcttc |
35274701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 584
Target Start/End: Complemental strand, 1884768 - 1884709
Alignment:
| Q |
525 |
atgacaagttttggtttggagggagaatagaaaataacatttggttactaataaaatgac |
584 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
1884768 |
atgaaaagtttttgtttggatggagaatgggaaacaacacttggttactaataaaatgac |
1884709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 27593718 - 27593661
Alignment:
| Q |
73 |
agaaatgggattgatcaggatatgttgttatttatagaaggatgaaagcatgattatgatt |
133 |
Q |
| |
|
|||||||||||||| ||||||||||| || | |||||||| |||||||||||||||||| |
|
|
| T |
27593718 |
agaaatgggattga---ggatatgttgtcatctgtagaaggaggaaagcatgattatgatt |
27593661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University