View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-15 (Length: 571)
Name: NF1002-Insertion-15
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 2 - 568
Target Start/End: Complemental strand, 38840739 - 38840174
Alignment:
| Q |
2 |
ccaacaccaacgaaggtgtaatttggaagattaagaaaactaaccagtgattggggaaccctttcataagcaccactaaacataataatgagatacgaaa |
101 |
Q |
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| T |
38840739 |
ccaaaaccaacgaaggtgtaatttggaagattaagaaaactaaccggtgattggggaaccctttcataagcaccactaaacataataatgagatacgaaa |
38840640 |
T |
|
| Q |
102 |
ctccatcgcagaggtgcacagagctgcatttagacgatggtgaataaggaggcacatgccactcggcaccagacccaaaaaacctttgtcgtgtcataag |
201 |
Q |
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| T |
38840639 |
ctccatcgcagaggtgcacagagctgcatttagacgatggtgaataaggaggcacatgccactcggcaccagacccaaaaaacctttgtcgtgtcataag |
38840540 |
T |
|
| Q |
202 |
ctgggctcaagaaacgcgagatatagtcatcaacctcatgcggctcatccccatatacatcatgatcatatacaacagtggtattgaatgaaacaccgtt |
301 |
Q |
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| T |
38840539 |
ctgggctcaagaaacgcgagatatagtcatcaacctcatgcggctcatccccatatacatcatgatcatatacaacagtggtattgatggaaacaccgtt |
38840440 |
T |
|
| Q |
302 |
cagattgaacgactcaacactaacataattcatgtcttccatgtcttgatggaagaagaagaatgggaaaatgaagcagatggaacttggaagaaagata |
401 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840439 |
cagattgaacgactcaacactaacataattcatgttttccatgtcatgatggaagaagaagaatgggaaaatgaagcagatggaacttggaagaaagata |
38840340 |
T |
|
| Q |
402 |
cggcgcagcttctataatgataaatagttgatttagggttaagcgtgtgttttattatgggcttgggccataataaaatattaaatcaagtgaatttctc |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840339 |
cggcgcagcttctataatgataaatagttgatttagggttaagcgtgtgttttattatgggcttgggccataataaaatattaaatcaagtgaatttctc |
38840240 |
T |
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| Q |
502 |
ctcttatataggctcttggannnnnnnnngttccttaccaaatttaagacatgaattagacacaaaa |
568 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38840239 |
ctcttatataggctcttgga-ttttttttgttccttaccaaatttaagacatgaattagacacaaaa |
38840174 |
T |
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