View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-16 (Length: 374)
Name: NF1002-Insertion-16
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-16 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 41 - 368
Target Start/End: Original strand, 49303065 - 49303390
Alignment:
| Q |
41 |
ttagtgattgagattcaaataaccgtacatgaaacaa-ggtaacaatcatgacgagataaataacatatacataaacaattaaattacttttgaaaccgt |
139 |
Q |
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| T |
49303065 |
ttagtgattgagattcaaataaccgtacatgaaacaaaggtaacaatcatgacgagataaataacatatacataaacaattaaattacttttgaaaccgt |
49303164 |
T |
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| Q |
140 |
acccaaggactacttgtcttgatttgtttccgtatgcatgcatggataaagaatatatcattttgtagacttaattgatgaatcactttcaatgattttg |
239 |
Q |
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| T |
49303165 |
acccaaggactacttgtcttgatttgtttccgtatgcatgcatggataaagaatatatcgttttgtagacttaattgatcaatcactttcaacgattttg |
49303264 |
T |
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| Q |
240 |
aaagtgacccaaatatctaatcgacgatcctccacttttctacttttctttcccaacaacaagccttaatttcttccgttccaaaacccctatataagca |
339 |
Q |
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| T |
49303265 |
aaaatgacccaaatatctaatggacgattctccacttttctacttttctttcc---caacaagccttaatttcttcccttcaaaaacccctatataagca |
49303361 |
T |
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| Q |
340 |
tgcgacgtttggcttattaactcaacaaa |
368 |
Q |
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| T |
49303362 |
tgccacgtttggcttattaactcaacaaa |
49303390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 207 - 368
Target Start/End: Original strand, 49289548 - 49289709
Alignment:
| Q |
207 |
gacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgatcctccacttttctacttttctttcccaacaacaagcctt |
306 |
Q |
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| T |
49289548 |
gacttaattgatcaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctccacttttctacttttcttttccaacaacaagcctt |
49289647 |
T |
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| Q |
307 |
aatttcttccgttccaaaacccctatataagcatgcgacgtttggcttattaactcaacaaa |
368 |
Q |
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| T |
49289648 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaa |
49289709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 207 - 368
Target Start/End: Original strand, 49296499 - 49296660
Alignment:
| Q |
207 |
gacttaattgatgaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgatcctccacttttctacttttctttcccaacaacaagcctt |
306 |
Q |
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| T |
49296499 |
gacttaattgatcaatcactttcaatgattttgaaagtgacccaaacatctaatcgacgattctccacttttctacttttcttttccaacaacaagcctt |
49296598 |
T |
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| Q |
307 |
aatttcttccgttccaaaacccctatataagcatgcgacgtttggcttattaactcaacaaa |
368 |
Q |
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| T |
49296599 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaa |
49296660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 49289425 - 49289488
Alignment:
| Q |
117 |
aattaaattacttttgaaaccgtacccaaggactacttgtcttgatttgtttccgtatgcatgcatg |
183 |
Q |
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| T |
49289425 |
aattaaattattcttgaagccgtaccaaaggact--ttgtcttgatttgtt-ccgtatgcatgcatg |
49289488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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