View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1002-Insertion-17 (Length: 287)

Name: NF1002-Insertion-17
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1002-Insertion-17
NF1002-Insertion-17
[»] chr6 (2 HSPs)
chr6 (7-287)||(20614425-20614711)
chr6 (208-287)||(15300071-15300152)
[»] chr4 (1 HSPs)
chr4 (47-285)||(27980466-27980702)
[»] chr3 (1 HSPs)
chr3 (120-237)||(13760287-13760399)
[»] chr8 (2 HSPs)
chr8 (120-166)||(41344071-41344117)
chr8 (208-245)||(22255307-22255344)
[»] chr5 (3 HSPs)
chr5 (123-166)||(8274536-8274579)
chr5 (120-172)||(22785719-22785771)
chr5 (208-245)||(1416604-1416641)
[»] chr1 (1 HSPs)
chr1 (123-169)||(45637913-45637959)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 20614425 - 20614711
Alignment:
Q  7 aaaacaggtatgcatattcatgatgaataaggtgtttttattctttctaaatctattttgttgctgattatgcatactgttaatattggcgaagctctgg 106  Q
    |||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||    
T  20614425 aaaacaggcatgtgtattcgtgatgaataaggtgtttttattctttctaaatctattctgttgccgattatgcatactgttaatattggcgaagctgtgg 20614524  T
Q  107 gtctttattaatcgaatggttaagtgatatgaggtttgataatgttgattttggcttggattcaaacgttattgcagatgcttccgattcaatcaccctc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||  ||||| ||||||||||||||    
T  20614525 gtctttattaatcgaatggttaagtgatatgaggtttgataatgttgattttgcgttggattcaaacattattgcagacacttccaattcaatcaccctc 20614624  T
Q  207 atccagata------ttactgaatttggacttattatttccgcttttagaagtctgtttttcaaagttcacaaactttaaagttgag 287  Q
     ||||||||      ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20614625 gtccagatattactgttactgaatttggacttgttatttccgcttttagaagtcagtttttcaaagttcacaaactttaaagttgag 20614711  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 15300152 - 15300071
Alignment:
Q  208 tccagatattactgaatttggacttattatttccgcttttagaagtctgttt--ttcaaagttcacaaactttaaagttgag 287  Q
    |||| ||||||||||||||||||||||||| |||||||  |||||| |||||   || ||||| ||||||||||| ||||||    
T  15300152 tccatatattactgaatttggacttattatctccgcttgcagaagtatgtttagatcgaagtttacaaactttaaggttgag 15300071  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 285
Target Start/End: Complemental strand, 27980702 - 27980466
Alignment:
Q  47 ttctttctaaatctattttgttgctgattatgcatactgttaatattggcgaagctctgggtctttattaatc----gaatggttaagtgatatgaggtt 142  Q
    ||||| |||||||||||||||||| |||| ||||  ||| |||| ||||| | | | ||||||||| |||  |    |||||||||||||||||||||||    
T  27980702 ttcttgctaaatctattttgttgccgattttgcaccctgataatgttggctatgttttgggtctttgttatgcattggaatggttaagtgatatgaggtt 27980603  T
Q  143 tgataatgttgattttggcttggattcaaacgttattgcagatgcttccgattcaatcaccctcatccagatattactgaatttggacttattatttccg 242  Q
    ||||||||||||  |||  ||||||| |||    |  ||||||||||     |||| ||||  | |||| |||||||||||||||||||||||||||  |    
T  27980602 tgataatgttgaccttgctttggattaaaaa---accgcagatgctt-----tcaaccaccaccgtccaaatattactgaatttggacttattatttttg 27980511  T
Q  243 cttttagaagtctgttt--ttcaaagttcacaaactttaaagttg 285  Q
    |||  | ||||||||||  ||| ||||||||||||| ||||||||    
T  27980510 cttgcaaaagtctgtttaattcgaagttcacaaactctaaagttg 27980466  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 13760399 - 13760287
Alignment:
Q  120 gaatggttaagtgatatgaggtttgataatgttgattttggcttggattcaaacgttattgcagatgcttccgattcaatcaccctcatccagatattac 219  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||| ||  ||| ||  |||||      ||||| ||||||||||||||| ||||    
T  13760399 gaatggttaagtgatatgaggtttgacaatgttgattttgcattggattccaaaattactgtggatgc-----cttcaaccaccctcatccagatgttac 13760305  T
Q  220 tgaatttggacttattat 237  Q
    ||||||||| ||||||||    
T  13760304 tgaatttggtcttattat 13760287  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 41344071 - 41344117
Alignment:
Q  120 gaatggttaagtgatatgaggtttgataatgttgattttggcttgga 166  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  41344071 gaatggttaagtgatatgagatttgataatgttgattttgccttgga 41344117  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 22255344 - 22255307
Alignment:
Q  208 tccagatattactgaatttggacttattatttccgctt 245  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  22255344 tccagatattacagaatttggacttattatctccgctt 22255307  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 8274536 - 8274579
Alignment:
Q  123 tggttaagtgatatgaggtttgataatgttgattttggcttgga 166  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  8274536 tggttaagtgatatgagatttgataatgttgattttgccttgga 8274579  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 22785719 - 22785771
Alignment:
Q  120 gaatggttaagtgatatgaggtttgataatgttgattttggcttggattcaaa 172  Q
    |||||| ||||||||||||| ||||||||||| |||||||  |||||||||||    
T  22785719 gaatggctaagtgatatgagatttgataatgtcgattttgcattggattcaaa 22785771  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 1416604 - 1416641
Alignment:
Q  208 tccagatattactgaatttggacttattatttccgctt 245  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  1416604 tccatatattactgaatttggacttattatctccgctt 1416641  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 45637913 - 45637959
Alignment:
Q  123 tggttaagtgatatgaggtttgataatgttgattttggcttggattc 169  Q
    ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  45637913 tggttaagtgatatgagattcgataatgtggattttgccttggattc 45637959  T

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