View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-2 (Length: 894)
Name: NF1002-Insertion-2
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 742; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 84 - 890
Target Start/End: Complemental strand, 38630701 - 38629888
Alignment:
| Q |
84 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggataccatgctgaacaatcttgtaagtaacacactcactagaa------- |
176 |
Q |
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| T |
38630701 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggatactatgctgaacaatcttgtaagtaacacactcactagagaagtaga |
38630602 |
T |
|
| Q |
177 |
-cataaaactaagcactaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
275 |
Q |
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| T |
38630601 |
gcataaaactaagcaccaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
38630502 |
T |
|
| Q |
276 |
ggtttagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccacgcatgtggttccacatggtaagatgtaaatttaaa |
375 |
Q |
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| T |
38630501 |
ggtttagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccacgcatgtggttccacatggtaagatgtaaatttaaa |
38630402 |
T |
|
| Q |
376 |
tgtaactgtatttttaccttctttgtatcatcagcagcagctaaaactttcttcctctaacaggtggccatacccatttcttgagcttaatattccatgg |
475 |
Q |
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| T |
38630401 |
tgtaactgtatttttaccttctttgtatcatcagcagcagctaaagctttcttcctctaacaggtggccatacccatttcttgagcttaatattccatgg |
38630302 |
T |
|
| Q |
476 |
gctcccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctatacaaaatacttgttattctcactaatgtatcttgt |
575 |
Q |
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| T |
38630301 |
gctcccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctataccaaatacttgttattctcactaatgtatcttgt |
38630202 |
T |
|
| Q |
576 |
ctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacagattcttccct |
675 |
Q |
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| T |
38630201 |
ctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaaaccaaaatcaatattcttcacagattcttccct |
38630102 |
T |
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| Q |
676 |
cgtgcatttgtgaggtcatactaattcggttatcgctataatattaaactgtaattgaggttaagctgcgaacttctatattgcagttacatgtggttgc |
775 |
Q |
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| T |
38630101 |
cgtgcatttgtgaggtcatactaattcggttatcgctataatattaaactgtaattgaggttaagctgtgaacttctatattgcagttacatgtggttgc |
38630002 |
T |
|
| Q |
776 |
aattgcggttgtgatgtcttttgatagacatgaaaaacagttataatgaggttgctgccagcaatttaaaacctttgtcagcatctgaaatagtagaaaa |
875 |
Q |
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| T |
38630001 |
aattgcggttgtgatgtcttttgatagacatgaaaaactgttataatgaggttgctgccagcaatttaaaaccattgtcagcatctgaaatagtaaaaaa |
38629902 |
T |
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| Q |
876 |
ctaataaatggcttg |
890 |
Q |
| |
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| T |
38629901 |
ct-ataaatggcttg |
38629888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 38630809 - 38630731
Alignment:
| Q |
7 |
aatttacataataatatgaatgaaattcaacaaatatttgcatgatagattgataattgatctttggaacttggaagta |
85 |
Q |
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| T |
38630809 |
aatttacataataatatgaatgaaattcaacaaatatttgtatgatagattgataattgatctttggaacttggaagta |
38630731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 642
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
559 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
642 |
Q |
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|||| |||| ||| |||||||||| |||||| | ||||||||||||||||| ||||||| ||| |||| ||||||||||||| |
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| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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