View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1002-Insertion-3 (Length: 836)

Name: NF1002-Insertion-3
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1002-Insertion-3
NF1002-Insertion-3
[»] chr1 (3 HSPs)
chr1 (400-836)||(35033736-35034178)
chr1 (8-259)||(35034318-35034573)
chr1 (228-259)||(34748049-34748080)
[»] chr6 (2 HSPs)
chr6 (388-621)||(32571284-32571517)
chr6 (728-804)||(32571116-32571192)
[»] chr2 (4 HSPs)
chr2 (223-259)||(30371383-30371419)
chr2 (224-259)||(23260319-23260354)
chr2 (221-259)||(28484615-28484653)
chr2 (222-259)||(34635703-34635740)
[»] scaffold0384 (1 HSPs)
scaffold0384 (224-259)||(4248-4283)
[»] chr8 (5 HSPs)
chr8 (225-259)||(9513828-9513862)
chr8 (221-259)||(39515145-39515183)
chr8 (221-258)||(12330329-12330366)
chr8 (216-257)||(26170420-26170461)
chr8 (222-259)||(34985345-34985382)
[»] chr7 (1 HSPs)
chr7 (225-259)||(5766638-5766672)
[»] chr4 (1 HSPs)
chr4 (225-259)||(51965372-51965406)
[»] scaffold0769 (1 HSPs)
scaffold0769 (222-259)||(4174-4211)
[»] chr5 (3 HSPs)
chr5 (222-259)||(20698543-20698580)
chr5 (222-259)||(22551519-22551556)
chr5 (222-259)||(37205003-37205040)
[»] chr3 (2 HSPs)
chr3 (222-259)||(49872972-49873009)
chr3 (225-258)||(51252049-51252082)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 400 - 836
Target Start/End: Complemental strand, 35034178 - 35033736
Alignment:
Q  400 tacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtacttgcgccaacaata 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35034178 tacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtacttgcgccaacaata 35034079  T
Q  500 accatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccgacatttgtcatggggcaaggtggtttatagcattcagagaagtcc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  35034078 accatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccggcatctgtcatggggcaaggtgttttatagcattcagagaagtcc 35033979  T
Q  600 ctctttctcttcctgcattgcaaaacaattgagnnnnnnnnnnnnngttaacctttatttatcagcaac----tgtgtatgtgtgtgcgctcgtgtgtc- 694  Q
    |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||    ||||||||||||||||||||||||||     
T  35033978 ctctttctcttcctgcattgcaaaacaattgag-caaaaaaaaaaagttaacctttatttatcagcaacaatgtgtgtatgtgtgtgcgctcgtgtgtct 35033880  T
Q  695 -tatatatattcacactatcaaaatgattataaaacctttgtggacaagatccactagcaccactatcatcatattgaagtaacatcattcctccaatgg 793  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  35033879 atatatatattcacactatcaaaatgattataaaacctttgtggacaagatccactagcaccaccatcatcatattgaagcaacatcattcctccaatgg 35033780  T
Q  794 cagttgcttcatcatccgca-gtgtatctaaaacttgatcatca 836  Q
    |||||||||||||||||||| |||||||| |||||||| |||||    
T  35033779 cagttgcttcatcatccgcaggtgtatctgaaacttgaccatca 35033736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 35034573 - 35034318
Alignment:
Q  8 ctttccacttgttttttaatgttacaattgtgtgttgaacatttgtaataccccctacaattcacacaatattaaataattaggaatcaaaacatattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35034573 ctttccacttgttttttaatgttacaattgtgtgttgaacatttgtagtaccccctacaattcacacaatattaaataattaggaatcaaaacatattca 35034474  T
Q  108 tatatatgattcatgatacaatgatactaaaaccttttatgtagatggacaacttttagataatgataagaaactttgtagctatttaaaacacacgcgc 207  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||| |||    
T  35034473 tatatatgatgcatgatacaatgatactaaaaccttt-atgtaaatggacaatgtttagataatgataagaaactttgtagctattcaaaacacacacgc 35034375  T
Q  208 ------atgcataattacaattagggttaatatgtctttactccctgtaatataggtc 259  Q
          ||||||||||| |||| ||||||||| |||||||  ||||||||||||||||    
T  35034374 gcacacatgcataattaaaatt-gggttaataggtctttatcccctgtaatataggtc 35034318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 34748049 - 34748080
Alignment:
Q  228 ttaatatgtctttactccctgtaatataggtc 259  Q
    ||||||||||||||||||||||||||||||||    
T  34748049 ttaatatgtctttactccctgtaatataggtc 34748080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 621
Target Start/End: Complemental strand, 32571517 - 32571284
Alignment:
Q  388 catttatcaatatacacatacttgcattgacacatataaaataggtaaatagttacctaggattgttaggatttcctttgatctctttgcatccgtactt 487  Q
    ||||||| |||||||| |||||||||||| |||     ||| ||||||||| ||||||||| |  |||| ||||||||||||||| |||| ||| |||||    
T  32571517 catttataaatatacatatacttgcattggcaccagggaaaaaggtaaataattacctagggtaattagcatttcctttgatctccttgcgtccatactt 32571418  T
Q  488 gcgccaacaataaccatcatccaaaatgtcttcatcgctttcaactcggatcactattttttgcccgacatttgtcatggggcaaggtggtttatagcat 587  Q
      |||| | ||||||||||| ||   ||||||||| | |||||| || || ||||| |||| |  | |||||| |||||| ||||||  ||||||||  |    
T  32571417 atgccagcgataaccatcattcactttgtcttcattgatttcaattctgaacactacttttggtgcaacatttatcatggtgcaagggagtttatagtgt 32571318  T
Q  588 tcagagaagtccctctttctcttcctgcattgca 621  Q
    |||||||||||  | || ||||||||||||||||    
T  32571317 tcagagaagtcaattttcctcttcctgcattgca 32571284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 804
Target Start/End: Complemental strand, 32571192 - 32571116
Alignment:
Q  728 acctttgtggacaagatccactagcaccactatcatcatattgaagtaacatcattcctccaatggcagttgcttca 804  Q
    ||||||||| | ||||||||||||||| | ||||||  | |||||| |||||||||||| |||||| | ||||||||    
T  32571192 acctttgtgaagaagatccactagcactagtatcattgtgttgaagcaacatcattccttcaatggaacttgcttca 32571116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 30371383 - 30371419
Alignment:
Q  223 tagggttaatatgtctttactccctgtaatataggtc 259  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30371383 tagggttaataggtctttactccctgtaatataggtc 30371419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 23260319 - 23260354
Alignment:
Q  224 agggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||| |||||||||||||||||||||||||    
T  23260319 agggttaataggtctttactccctgtaatataggtc 23260354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 28484653 - 28484615
Alignment:
Q  221 attagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  28484653 attaggattaataggtctttactccctgtaatataggtc 28484615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 34635703 - 34635740
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34635703 ttagggttaataggtctttaccccctgtaatataggtc 34635740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 4248 - 4283
Alignment:
Q  224 agggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||| |||||||||||||||||||||||||    
T  4248 agggttaataggtctttactccctgtaatataggtc 4283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 9513828 - 9513862
Alignment:
Q  225 gggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||||||||| ||||||||||||||||    
T  9513828 gggttaatatgtctttaccccctgtaatataggtc 9513862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 39515183 - 39515145
Alignment:
Q  221 attagggttaatatgtctttactccctgtaatataggtc 259  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  39515183 attagggttaataggcctttactccctgtaatataggtc 39515145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 12330329 - 12330366
Alignment:
Q  221 attagggttaatatgtctttactccctgtaatataggt 258  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  12330329 attagggttaataggtctttaccccctgtaatataggt 12330366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 26170461 - 26170420
Alignment:
Q  216 ttacaattagggttaatatgtctttactccctgtaatatagg 257  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  26170461 ttacatttagggttaatatgtctttaccccctgtaatttagg 26170420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 34985382 - 34985345
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  34985382 ttagggttaataggtctttaccccctgtaatataggtc 34985345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 5766638 - 5766672
Alignment:
Q  225 gggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||||||||| ||||||||||||||||    
T  5766638 gggttaatatgtctttaccccctgtaatataggtc 5766672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 51965372 - 51965406
Alignment:
Q  225 gggttaatatgtctttactccctgtaatataggtc 259  Q
    ||||||||| |||||||||||||||||||||||||    
T  51965372 gggttaataggtctttactccctgtaatataggtc 51965406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 4211 - 4174
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  4211 ttagggttaataggtctttaccccctgtaatataggtc 4174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 20698580 - 20698543
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  20698580 ttagggttaataggtctttacttcctgtaatataggtc 20698543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 22551519 - 22551556
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  22551519 ttagggttaataggtctttaccccctgtaatataggtc 22551556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 37205040 - 37205003
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  37205040 ttagggttaatatgtctttaccctctgtaatataggtc 37205003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 49873009 - 49872972
Alignment:
Q  222 ttagggttaatatgtctttactccctgtaatataggtc 259  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49873009 ttagggttaataggtctttaccccctgtaatataggtc 49872972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 51252049 - 51252082
Alignment:
Q  225 gggttaatatgtctttactccctgtaatataggt 258  Q
    ||||||||| ||||||||||||||||||||||||    
T  51252049 gggttaataggtctttactccctgtaatataggt 51252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University