View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1002-Insertion-4 (Length: 809)
Name: NF1002-Insertion-4
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1002-Insertion-4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 236 - 809
Target Start/End: Original strand, 37272589 - 37273162
Alignment:
| Q |
236 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
37272589 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctga |
37272688 |
T |
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| Q |
336 |
cccctgttatcactaccagcagcttcagcaattgcagccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
435 |
Q |
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| T |
37272689 |
cccctgttatcactaccagcagcttcagcaattgcagtcatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
37272788 |
T |
|
| Q |
436 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggctaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaat |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37272789 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagctatggctggaat |
37272888 |
T |
|
| Q |
536 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
635 |
Q |
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| T |
37272889 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
37272988 |
T |
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| Q |
636 |
gagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatattttctgttgtgggaattttctttggaagaaggttcttgagagaaa |
735 |
Q |
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| T |
37272989 |
gagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatgttttctgttgtgggaattttctttggaagaaggttcttgagggaaa |
37273088 |
T |
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| Q |
736 |
tgagggaagtggggtttgtaatgagcttagttgggtggtggaactttggtgaactagtagtgttcaaggacttt |
809 |
Q |
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| T |
37273089 |
tgagggaagtggggtttgtaatgagcttagttgggttgtggaactttggtgaactagtagtgttcaaggacttt |
37273162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 37272362 - 37272556
Alignment:
| Q |
8 |
gtgcatactgcaggaactggagtgattcttaactagcaaactaagtgctaaccaattttaacaatcttaactaattcctaacagaatatatattcagaaa |
107 |
Q |
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| T |
37272362 |
gtgcatactgcaggaactggagtgattcttaactagcaaactaaatgctaaccaattttaacaatcttaactaattcctaacagaatatatattcagaaa |
37272461 |
T |
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| Q |
108 |
gacnnnnnnncacaaacaacagaatgatttatatagcattaaaaatatacatgttacaagagaaatgaatggtttatgtatcccataacaacaac |
202 |
Q |
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| T |
37272462 |
gacaaaaaaacacaaacaacagaatgatttatatagcattaaaaatatacatgttacaagagaaatgaatggtttatatatcccataacaacaac |
37272556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 37268316 - 37268510
Alignment:
| Q |
8 |
gtgcatactgcaggaactggagtgattcttaactagcaaactaagtgctaaccaattttaacaatcttaactaattcctaacagaatatatattcagaaa |
107 |
Q |
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||||||| ||| || |||||| |||||||| | ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37268316 |
gtgcatattgctggtactggaatgattcttgaatagcaaactaaatgctaaccaactctaacaatcttaactaattcctaacagaatatatattcagaaa |
37268415 |
T |
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| Q |
108 |
gacnnnnnnncacaaacaacagaatgatttatatagcattaaaaatatacatgttacaagagaaatgaatggtttatgtatcccataacaacaac |
202 |
Q |
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| T |
37268416 |
gataaaaaaacacagacaacagaatgatttatatagcattgaaaatatacatgttacaagaaatatgaatgatttatatatcccataacaacaac |
37268510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 37268551 - 37268655
Alignment:
| Q |
236 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
335 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
37268551 |
gtttcaccgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctga |
37268650 |
T |
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| Q |
336 |
cccct |
340 |
Q |
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|||| |
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| T |
37268651 |
gccct |
37268655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 373 - 606
Target Start/End: Original strand, 20580779 - 20581012
Alignment:
| Q |
373 |
ccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaagacctaaaccaattataactcctttatcgttacgcat |
472 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
20580779 |
ccatttcactagccattgcatcttgtgttgacacaaaccctgaagctgctaacccaccaccaagacccaaaccaatgataactcctttatcgttacgcat |
20580878 |
T |
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| Q |
473 |
acggttgatttggctaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaattaatggtaacaaaagtgctaaaccacggttgtctgat |
572 |
Q |
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| T |
20580879 |
acggttgatttggttaagtgctggttgaagaatgttgaacagaaccgaagctatggctggaattaatggtaacagaagtgcttaaccgcggttgtctgat |
20580978 |
T |
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| Q |
573 |
gatccttctgctatttcagctatttgttgtgctg |
606 |
Q |
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| T |
20580979 |
gatccttctgctatttcagctatctgttgtgctg |
20581012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 635 - 745
Target Start/End: Original strand, 20581011 - 20581121
Alignment:
| Q |
635 |
tgagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatattttctgttgtgggaattttctttggaagaaggttcttgagagaa |
734 |
Q |
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|||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
20581011 |
tgagaatattgctcctgctagtgttgtccctgctatggaagttgatagtttaatgttttctgttgtgggaattttctttggaataaggttcttaagggaa |
20581110 |
T |
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| Q |
735 |
atgagggaagt |
745 |
Q |
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| T |
20581111 |
aggagtgaagt |
20581121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 39016975 - 39017088
Alignment:
| Q |
245 |
tctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctgacccctgtta |
344 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
39016975 |
tctcatcctgttgatctggttgagagcaggctgcaaaatattgtacagcacccaaaggatagctggtgcaacaacaaacaacagaagtgttcccctgttg |
39017074 |
T |
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| Q |
345 |
tcactaccagcagc |
358 |
Q |
| |
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||||| |||||||| |
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| T |
39017075 |
tcacttccagcagc |
39017088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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