View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1002-Insertion-7 (Length: 754)

Name: NF1002-Insertion-7
Description: NF1002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1002-Insertion-7
NF1002-Insertion-7
[»] chr2 (35 HSPs)
chr2 (34-632)||(10252394-10252994)
chr2 (453-629)||(10265434-10265612)
chr2 (639-752)||(10253031-10253155)
chr2 (35-231)||(38400785-38400975)
chr2 (34-230)||(21665627-21665816)
chr2 (38-154)||(16096998-16097111)
chr2 (34-154)||(24035544-24035661)
chr2 (34-203)||(28425660-28425826)
chr2 (34-153)||(16227368-16227484)
chr2 (38-154)||(13800543-13800657)
chr2 (34-154)||(12134039-12134156)
chr2 (34-230)||(7742055-7742250)
chr2 (48-154)||(29939861-29939964)
chr2 (113-225)||(22727388-22727497)
chr2 (170-230)||(12694795-12694855)
chr2 (48-149)||(24410437-24410535)
chr2 (34-104)||(37182656-37182726)
chr2 (48-154)||(9046029-9046133)
chr2 (34-153)||(11912757-11912873)
chr2 (166-231)||(37182756-37182821)
chr2 (48-154)||(3155217-3155320)
chr2 (48-154)||(4505894-4505997)
chr2 (48-154)||(6965007-6965110)
chr2 (476-553)||(10247849-10247928)
chr2 (48-154)||(12337447-12337550)
chr2 (105-153)||(42029199-42029247)
chr2 (440-495)||(10241125-10241180)
chr2 (103-154)||(40636190-40636241)
chr2 (117-153)||(11952588-11952624)
chr2 (539-586)||(10244412-10244459)
chr2 (539-586)||(10255024-10255071)
chr2 (107-154)||(34694031-34694078)
chr2 (107-154)||(34716443-34716490)
chr2 (170-225)||(44914835-44914890)
chr2 (680-729)||(10241797-10241846)
[»] chr4 (38 HSPs)
chr4 (38-225)||(52468282-52468462)
chr4 (34-150)||(27112022-27112135)
chr4 (36-231)||(36118383-36118571)
chr4 (34-227)||(24396926-24397114)
chr4 (34-230)||(39329317-39329507)
chr4 (34-151)||(36178665-36178778)
chr4 (42-149)||(2135324-2135428)
chr4 (38-132)||(4167911-4168002)
chr4 (36-138)||(40217226-40217325)
chr4 (36-231)||(10041923-10042113)
chr4 (35-154)||(36362869-36362984)
chr4 (34-154)||(51691913-51692032)
chr4 (48-154)||(54780783-54780886)
chr4 (38-145)||(37744916-37745021)
chr4 (113-231)||(24614021-24614137)
chr4 (34-149)||(45656167-45656279)
chr4 (48-154)||(2790739-2790842)
chr4 (48-154)||(10978906-10979009)
chr4 (48-154)||(43455529-43455632)
chr4 (48-154)||(47128993-47129096)
chr4 (48-153)||(38209590-38209692)
chr4 (60-154)||(39655252-39655343)
chr4 (113-154)||(30507120-30507161)
chr4 (48-147)||(34027585-34027681)
chr4 (72-154)||(32128614-32128693)
chr4 (47-153)||(35779325-35779427)
chr4 (48-146)||(37777229-37777324)
chr4 (34-151)||(15735087-15735196)
chr4 (170-216)||(5893134-5893180)
chr4 (166-231)||(4167846-4167911)
chr4 (48-154)||(34768572-34768675)
chr4 (48-145)||(1105538-1105632)
chr4 (107-154)||(48209302-48209349)
chr4 (107-154)||(55255319-55255366)
chr4 (108-154)||(9578662-9578708)
chr4 (170-231)||(11906826-11906887)
chr4 (103-144)||(13460265-13460306)
chr4 (103-147)||(23508515-23508560)
[»] chr8 (31 HSPs)
chr8 (36-231)||(15167338-15167529)
chr8 (34-230)||(41677098-41677290)
chr8 (38-226)||(5973037-5973219)
chr8 (39-231)||(15078750-15078936)
chr8 (34-149)||(23941095-23941207)
chr8 (35-153)||(39332405-39332520)
chr8 (34-153)||(34048705-34048823)
chr8 (38-154)||(7944521-7944634)
chr8 (38-154)||(11290175-11290288)
chr8 (38-153)||(14509983-14510094)
chr8 (34-131)||(5942683-5942777)
chr8 (72-225)||(30674334-30674481)
chr8 (42-154)||(8646201-8646309)
chr8 (34-145)||(5721546-5721654)
chr8 (48-154)||(45475818-45475921)
chr8 (48-153)||(5860744-5860846)
chr8 (36-152)||(25561496-25561607)
chr8 (108-153)||(9108551-9108596)
chr8 (48-154)||(10917392-10917495)
chr8 (48-154)||(23606628-23606731)
chr8 (48-154)||(30883330-30883433)
chr8 (48-153)||(23798261-23798363)
chr8 (107-153)||(34868177-34868223)
chr8 (108-154)||(41879239-41879285)
chr8 (48-154)||(13534686-13534788)
chr8 (48-154)||(13624226-13624328)
chr8 (48-154)||(2952220-2952323)
chr8 (114-154)||(38009151-38009191)
chr8 (169-231)||(38009076-38009138)
chr8 (170-231)||(5942784-5942845)
chr8 (170-231)||(34812682-34812743)
[»] scaffold1590 (1 HSPs)
scaffold1590 (34-154)||(257-374)
[»] chr1 (32 HSPs)
chr1 (34-153)||(38547035-38547151)
chr1 (38-231)||(45758496-45758685)
chr1 (34-231)||(39134644-39134838)
chr1 (440-523)||(543299-543382)
chr1 (34-153)||(26803946-26804059)
chr1 (38-203)||(43235720-43235881)
chr1 (48-147)||(17168968-17169064)
chr1 (48-147)||(27559649-27559745)
chr1 (48-154)||(5027561-5027664)
chr1 (48-154)||(5316692-5316795)
chr1 (48-154)||(23185439-23185542)
chr1 (48-154)||(44655753-44655856)
chr1 (40-154)||(38853527-38853637)
chr1 (48-149)||(9173026-9173124)
chr1 (48-149)||(9181008-9181106)
chr1 (57-154)||(21740935-21741029)
chr1 (103-154)||(50881494-50881545)
chr1 (34-154)||(33170757-33170874)
chr1 (46-145)||(6771801-6771897)
chr1 (38-225)||(5533314-5533495)
chr1 (48-154)||(14146312-14146415)
chr1 (47-154)||(50146307-50146411)
chr1 (48-153)||(4971617-4971719)
chr1 (107-154)||(27906727-27906774)
chr1 (48-152)||(1366878-1366979)
chr1 (46-138)||(40501804-40501893)
chr1 (49-138)||(51607453-51607540)
chr1 (113-154)||(6889685-6889726)
chr1 (113-154)||(6891531-6891572)
chr1 (50-145)||(16140069-16140161)
chr1 (113-154)||(17322621-17322662)
chr1 (113-154)||(22865459-22865500)
[»] chr7 (24 HSPs)
chr7 (34-154)||(7398438-7398555)
chr7 (34-154)||(27237421-27237538)
chr7 (42-231)||(2611185-2611369)
chr7 (34-231)||(23859060-23859251)
chr7 (34-153)||(9021799-9021914)
chr7 (34-231)||(12419419-12419610)
chr7 (36-153)||(6765680-6765794)
chr7 (36-231)||(12981315-12981502)
chr7 (34-154)||(36891565-36891682)
chr7 (43-204)||(23020435-23020589)
chr7 (48-154)||(29077221-29077324)
chr7 (48-154)||(48983842-48983945)
chr7 (34-153)||(21763586-21763702)
chr7 (48-154)||(8171537-8171640)
chr7 (48-154)||(20091279-20091382)
chr7 (36-138)||(20153190-20153289)
chr7 (107-154)||(23744853-23744900)
chr7 (103-152)||(36902924-36902973)
chr7 (113-153)||(9014177-9014217)
chr7 (34-86)||(9014825-9014877)
chr7 (48-154)||(18776764-18776867)
chr7 (72-154)||(26254018-26254097)
chr7 (171-231)||(26917655-26917715)
chr7 (48-131)||(23551092-23551172)
[»] chr6 (21 HSPs)
chr6 (34-150)||(2477587-2477700)
chr6 (34-146)||(20611780-20611889)
chr6 (48-147)||(28075787-28075883)
chr6 (36-150)||(6159430-6159541)
chr6 (680-752)||(8295357-8295428)
chr6 (48-154)||(13727398-13727501)
chr6 (48-154)||(20711719-20711822)
chr6 (48-154)||(21479498-21479601)
chr6 (37-138)||(21183690-21183788)
chr6 (46-154)||(34397859-34397964)
chr6 (48-147)||(17353958-17354054)
chr6 (66-153)||(30121784-30121868)
chr6 (48-154)||(27788687-27788790)
chr6 (712-752)||(33256327-33256367)
chr6 (48-146)||(33774121-33774216)
chr6 (49-154)||(21280550-21280652)
chr6 (105-153)||(1155849-1155897)
chr6 (48-154)||(19737691-19737794)
chr6 (167-231)||(20611905-20611969)
chr6 (34-130)||(4036938-4037031)
chr6 (170-203)||(21183650-21183683)
[»] chr5 (38 HSPs)
chr5 (34-153)||(14318382-14318498)
chr5 (35-225)||(2530826-2531009)
chr5 (34-154)||(36868872-36868989)
chr5 (34-154)||(2024638-2024755)
chr5 (34-153)||(2412075-2412191)
chr5 (36-230)||(40794249-40794438)
chr5 (34-154)||(1366522-1366639)
chr5 (38-154)||(33037771-33037884)
chr5 (34-154)||(34425890-34426007)
chr5 (34-231)||(11242241-11242431)
chr5 (36-153)||(41911614-41911728)
chr5 (48-147)||(16198797-16198893)
chr5 (35-146)||(24395727-24395835)
chr5 (51-231)||(26718871-26719045)
chr5 (51-231)||(26988615-26988789)
chr5 (103-231)||(10407514-10407639)
chr5 (105-154)||(606209-606258)
chr5 (34-153)||(10543661-10543776)
chr5 (38-152)||(22648734-22648845)
chr5 (48-154)||(30854330-30854433)
chr5 (48-154)||(34756362-34756465)
chr5 (48-154)||(38869359-38869462)
chr5 (48-144)||(19523200-19523293)
chr5 (48-147)||(9364292-9364388)
chr5 (48-154)||(27079012-27079115)
chr5 (48-154)||(28822338-28822441)
chr5 (72-153)||(7338024-7338102)
chr5 (39-153)||(15639635-15639749)
chr5 (113-154)||(27530546-27530587)
chr5 (48-154)||(16592070-16592173)
chr5 (48-154)||(23284058-23284161)
chr5 (114-154)||(35080766-35080806)
chr5 (48-145)||(15480094-15480188)
chr5 (107-154)||(31194608-31194655)
chr5 (46-154)||(36187875-36187980)
chr5 (113-154)||(31881430-31881471)
chr5 (170-231)||(35080694-35080755)
chr5 (72-147)||(40389539-40389611)
[»] scaffold0097 (1 HSPs)
scaffold0097 (36-231)||(38914-39106)
[»] scaffold0012 (1 HSPs)
scaffold0012 (42-230)||(206417-206597)
[»] scaffold1320 (1 HSPs)
scaffold1320 (39-231)||(1346-1532)
[»] chr3 (21 HSPs)
chr3 (34-154)||(26279530-26279649)
chr3 (36-154)||(42453403-42453511)
chr3 (34-154)||(54574826-54574943)
chr3 (42-204)||(32319109-32319263)
chr3 (38-153)||(789930-790042)
chr3 (34-153)||(25855412-25855527)
chr3 (48-146)||(8073345-8073440)
chr3 (48-154)||(21582775-21582878)
chr3 (48-154)||(54619202-54619305)
chr3 (48-145)||(47467688-47467782)
chr3 (38-154)||(8420320-8420433)
chr3 (38-153)||(49393085-49393195)
chr3 (72-154)||(3953895-3953974)
chr3 (48-154)||(34290635-34290738)
chr3 (48-146)||(44708481-44708576)
chr3 (103-154)||(18372539-18372590)
chr3 (34-146)||(28689368-28689477)
chr3 (71-154)||(36716024-36716104)
chr3 (107-154)||(38681092-38681139)
chr3 (38-154)||(52374650-52374763)
chr3 (48-147)||(50939239-50939335)
[»] scaffold0007 (1 HSPs)
scaffold0007 (34-154)||(230858-230975)
[»] scaffold0018 (1 HSPs)
scaffold0018 (34-148)||(173515-173626)
[»] scaffold0182 (1 HSPs)
scaffold0182 (34-153)||(23993-24109)
[»] scaffold0039 (1 HSPs)
scaffold0039 (48-154)||(106539-106642)
[»] scaffold0022 (2 HSPs)
scaffold0022 (38-222)||(40076-40257)
scaffold0022 (38-222)||(138136-138317)
[»] scaffold0428 (1 HSPs)
scaffold0428 (712-752)||(445-485)
[»] scaffold0227 (1 HSPs)
scaffold0227 (108-220)||(16123-16232)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 34 - 632
Target Start/End: Original strand, 10252394 - 10252994
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgata-----gtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaa 128  Q
    ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10252394 ggagggtggtttgaggttcctcatgtatatgatatgatagtggttttcacctttgggtgtgtagtatatatacgacgacaccttgtatttatcttttaaa 10252493  T
Q  129 aaatttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaaga 228  Q
    |||||||||||||||||| ||||||            || |||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||||||||    
T  10252494 aaatttaaattgaacatttttcttt---aaaaaaaaatatgtttttattttattacacgcctcttttcacttaccgtgccgagcctcctgattcgtaaga 10252590  T
Q  229 acgtcgccggtagtgaaatagaaattaaaacaacggttaattctgtttacatctgcaaatggaaatgtttgtacttcagtattagtgtttctcttcatat 328  Q
    | | | | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10252591 aaggccctggtagtgaaatagaaattaaaacaacggttaattctttttacatctgctaatggaaatgtttgtacttcagtattagtgtttctcttcatat 10252690  T
Q  329 ttaagtgtggaaactgtgctacatacatccttagattttattctcccaccaagcggaaacgtttgccatttttctgttattttatccttaacttagatgc 428  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10252691 ttaagtgtggaaactgtgctacatacatccttaaattttattctcccaccaagcggaaacgtttgccatttttctgctattttatccttaacttagatgc 10252790  T
Q  429 acaatcaaactaaacagaatagtgttgatcatttctaattttctaacttttggctcaaccctttaaatacactcattgacaaggccttggttaaaacatc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  10252791 acaatcaaactaaacagaatagtgttgatcatttctaattttcaaacttttggctcaggtctttaaatacactcattgacaaggccttggttaaaacatc 10252890  T
Q  529 atgttggagcactagtggagacattgttcaacatgatgaggcttgagtcaatctcaatgctttatcccatcaggatgaataggattgttagtttttctaa 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10252891 atgttggagcactagtggagacattgttcaacatgatgaggcttgagtcaatctcaatgctttatcccatcaggatgaataggattgttagtttttctaa 10252990  T
Q  629 tcat 632  Q
    ||||    
T  10252991 tcat 10252994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 453 - 629
Target Start/End: Original strand, 10265434 - 10265612
Alignment:
Q  453 ttgatcatttctaattttctaacttttggctcaaccctttaaatacactcattgacaaggccttggttaaaacatcatgt--tggagcactagtggagac 550  Q
    |||||||||||||| |||||| |||||  |||| | ||||| |||||||| || ||||| ||| ||||||||||||||||  | ||| ||||   |||||    
T  10265434 ttgatcatttctaaatttctagcttttatctcatctctttatatacactcctttacaagacctcggttaaaacatcatgtacttgagaactatgagagac 10265533  T
Q  551 attgttcaacatgatgaggcttgagtcaatctcaatgctttatcccatcaggatgaataggattgttagtttttctaat 629  Q
     ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10265534 tttacttaacatgatgaggcttgagtcaatctcaatgctttatcccatcaggatgaataggattgttagtttttctaat 10265612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 639 - 752
Target Start/End: Original strand, 10253031 - 10253155
Alignment:
Q  639 aggttcacggataagatcttcaacgttgaattgtggaa-----------agctcatgtttggtgagagagtaatcaagatggggttgcatggaaggagtg 727  Q
    |||||||||||||||||||||||||||||||||| |||           |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10253031 aggttcacggataagatcttcaacgttgaattgtagaagaacatattgaagctcatgtttggtgagagagtaatcaagatggggttgcatggaaggagtg 10253130  T
Q  728 agtggaccaagtgtgggaatgagga 752  Q
    |||||||||||||||||||||||||    
T  10253131 agtggaccaagtgtgggaatgagga 10253155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 38400785 - 38400975
Alignment:
Q  35 gagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattt 134  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||  ||| ||| ||||||| |||   |||| ||||||||||||||||||||||    
T  38400785 gagggtggtttgaggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgac---accttgtatttatcttttaaaaaattt 38400881  T
Q  135 aaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||| ||||||||||||| |           || |||||||||||||| | |  |||||||||||||||| ||||||| | ||||||||||||||||    
T  38400882 aaatagaacattgttcttat---aaaaaatatatgtttttattttattgcgggtctcttttcacttacagagccgaactttcggattcgtaagaacg 38400975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 21665816 - 21665627
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||| ||||||||||||||| | ||||| ||||||| ||| | ||| ||  |||||||||||   |||  |||||||||||||||||||||    
T  21665816 ggagggtggtttgtggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgac---accgtgtatttatcttttaaaaaatt 21665720  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    ||||| |||||||||||||||           ||| ||||||||||||||| |  |||||||||||||||| ||||| ||||| |||||||| ||||    
T  21665719 taaatagaacattgttctttt----aaaaaaatacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaac 21665627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 16096998 - 16097111
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||||||| | ||||  |||||||||||||||||     ||||||||| |   |||| |||||||||||||||||||||||||    
T  16096998 ggtggtttgaggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggc---accttgtatttatcttttaaaaaatttaaa 16097094  T
Q  138 ttgaacattgttctttt 154  Q
    | |||||||||||||||    
T  16097095 tagaacattgttctttt 16097111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 24035661 - 24035544
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||| | ||||||||||||  | ||||| ||||||||||| ||||| ||| || |||||| |   |||| |||||||||||||||||||||    
T  24035661 ggagggtggtttgcgattcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggc---accttgtatttatcttttaaaaaatt 24035565  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  24035564 taaatagaacattgttctttt 24035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 28425826 - 28425660
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||| || |||||||||||||| |||||| ||||| ||||||| |||||||||   | |||||||   |||||||| |||||||||||||||||  ||    
T  28425826 ggagggaggcttgaggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatata---cgacaccttgtatttatcttttaaaatttt 28425730  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttaca 203  Q
    ||||| |||||||||||||||           ||| ||||||||||||||| |||||||||||| |||||    
T  28425729 taaatagaacattgttcttttaaaaaaaaaaatacatttttattttattacggacctcttttcatttaca 28425660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 16227484 - 16227368
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||| ||||||||  ||||| |||||| || | ||||| ||  |||||||||||   |||| |||||||||||||||||||||    
T  16227484 ggagggtggtttgaggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgac---accttgtatttatcttttaaaaaatt 16227388  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||| ||||||||||    
T  16227387 taaatagaaaattgttcttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 13800657 - 13800543
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcaccttt-gggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaa 136  Q
    |||| ||||||||||||| |||||||  ||||| ||||||||||| |||||| ||| ||||||||| |   ||||  |||||||||||||||||||||||    
T  13800657 ggtgatttgaggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggc---accttatatttatcttttaaaaaatttaa 13800561  T
Q  137 attgaacattgttctttt 154  Q
    || |||||||||||||||    
T  13800560 atagaacattgttctttt 13800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 12134156 - 12134039
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||| ||||||||| ||| |||||||||     |||| ||||||||||||||||   ||    
T  12134156 ggagggtggtttgaggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggt---accttgtatttatcttttaaattttt 12134060  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  12134059 taaatagaacattgttctttt 12134039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 7742250 - 7742055
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatctttt-aaaaaat 132  Q
    |||| |||||||||||||||||||| ||| ||||||  ||||||||||||| |||  || ||||||   | ||||| | ||||||||||||| |||||||    
T  7742250 ggagagtggtttgaggttcctcatgcatacgatagtatttttcacctttggatgtaacgcatatat---atgacacattgtatttatcttttaaaaaaat 7742154  T
Q  133 ttaaattgaacattgttctttt-nnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
     ||||| |||||||||||||||            |  ||||||||||||| || | |||||||||||||||||  ||||||||||||||||||| ||||    
T  7742153 ataaatagaacattgttcttttaaaaaaataatatgtgtttttattttatcacgggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 29939964 - 29939861
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || |||||||||||   |||| ||||||||||| |||||||| ||||| ||||||||    
T  29939964 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgac---accttgtatttatcttgtaaaaaatataaatagaacattg 29939868  T
Q  148 ttctttt 154  Q
     ||||||    
T  29939867 ctctttt 29939861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 22727497 - 22727388
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaac 212  Q
    |||||||||||||||||||||||||| |||||||||||||||           |||||||||||||||||||   ||||||||||||||||| | ||| |    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttctttt---aaaaaaaatacgtttttattttattacttgcctcttttcacttacagcgtcgagc 22727401  T
Q  213 ctccggattcgta 225  Q
    ||||| |||||||    
T  22727400 ctccgaattcgta 22727388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 12694795 - 12694855
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    ||||||||||||||| |  |||||||||||||||| ||||| |||||||||||||||||||    
T  12694795 tttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaac 12694855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 24410437 - 24410535
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  24410437 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 24410533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 37182656 - 37182726
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgac 104  Q
    |||||||| |||||||||||||||||||| | ||||| ||||||| ||||||||| | | |||||||||||    
T  37182656 ggagggtgatttgaggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgac 37182726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 9046029 - 9046133
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatctttt-aaaaaatttaaattgaacatt 146  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  |||||||||||| ||||||| ||||| |||||||    
T  9046029 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaaatataaatagaacatt 9046125  T
Q  147 gttctttt 154  Q
    ||||||||    
T  9046126 gttctttt 9046133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 11912873 - 11912757
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||| ||||||| | ||||| |||||| |||||| ||| | | ||||||||| |   || | |||||||| ||||   |||||    
T  11912873 ggagggtggtttgaggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggc---actttgtatttatttttttttaaatt 11912777  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||||||||||||    
T  11912776 taaatagaacattgttcttt 11912757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 37182756 - 37182821
Alignment:
Q  166 tacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||||||||| |  |||||||||||||||| ||||| ||||||||||| || |||||    
T  37182756 tacgtttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacg 37182821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 3155217 - 3155320
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| | |||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  3155217 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 3155313  T
Q  148 ttctttt 154  Q
     ||||||    
T  3155314 ctctttt 3155320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 4505894 - 4505997
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||| |||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  4505894 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 4505990  T
Q  148 ttctttt 154  Q
     ||||||    
T  4505991 ctctttt 4505997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 6965007 - 6965110
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   || | |||||||||||||||||||| ||||| ||||||||    
T  6965007 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---actttgtatttatcttttaaaaaatataaatagaacattg 6965103  T
Q  148 ttctttt 154  Q
     ||||||    
T  6965104 ctctttt 6965110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 10247849 - 10247928
Alignment:
Q  476 ttttggctcaaccctttaaatacactcattgacaaggccttggttaaaacatcatgt--tggagcactagtggagacatt 553  Q
    |||||||||||| ||||||||||| || || ||||||||||||| |||| |||||||  | ||| |||||||||||||||    
T  10247849 ttttggctcaactctttaaatacattctttcacaaggccttggtaaaaaaatcatgtgcttgagaactagtggagacatt 10247928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 12337550 - 12337447
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  |  ||||||   | ||||||| |||||||||||||||||||| ||||| ||||||||    
T  12337550 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatat---atgacaccttgtatttatcttttaaaaaatataaatagaacattg 12337454  T
Q  148 ttctttt 154  Q
     ||||||    
T  12337453 ctctttt 12337447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 42029199 - 42029247
Alignment:
Q  105 gacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  42029199 gacaccttatatttatcttttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 495
Target Start/End: Original strand, 10241125 - 10241180
Alignment:
Q  440 aaacagaatagtgttgatcatttctaattttctaacttttggctcaaccctttaaa 495  Q
    ||||| |||||||||||||||||||||||||||| |||| || ||||| |||||||    
T  10241125 aaacaaaatagtgttgatcatttctaattttctagctttcgggtcaactctttaaa 10241180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 40636190 - 40636241
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  40636190 acgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 40636241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 11952624 - 11952588
Alignment:
Q  117 ttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11952624 ttatcttttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 10244412 - 10244459
Alignment:
Q  539 actagtggagacattgttcaacatgatgaggcttgagtcaatctcaat 586  Q
    |||||||||||||||  | |||||||| ||||||||||||||||||||    
T  10244412 actagtggagacattactgaacatgataaggcttgagtcaatctcaat 10244459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 586
Target Start/End: Original strand, 10255024 - 10255071
Alignment:
Q  539 actagtggagacattgttcaacatgatgaggcttgagtcaatctcaat 586  Q
    |||||||||||||||  | |||||||| ||||||||||||||||||||    
T  10255024 actagtggagacattactgaacatgataaggcttgagtcaatctcaat 10255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 34694031 - 34694078
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  34694031 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 34694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 34716443 - 34716490
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  34716443 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 34716490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 44914890 - 44914835
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgta 225  Q
    ||||||||||||||| ||||||||||||||||||| || || ||| || |||||||    
T  44914890 tttttattttattacggacctcttttcacttacagagctgagccttcgaattcgta 44914835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 729
Target Start/End: Original strand, 10241797 - 10241846
Alignment:
Q  680 tcatgtttggtgagagagtaatcaagatggggttgcatggaaggagtgag 729  Q
    |||||||||||| ||||||| ||||||  |||||||||||||| ||||||    
T  10241797 tcatgtttggtgggagagtattcaagagagggttgcatggaagaagtgag 10241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 52468282 - 52468462
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||||| ||| |   ||||||   ||| ||||| |||||||||||||||||||||||||    
T  52468282 ggtggtttgaggttcctcatgcatacggtagtgattttcacctttggatgtataacatatat---acggcaccttgtatttatcttttaaaaaatttaaa 52468378  T
Q  138 ttgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgta 225  Q
    | |||||||||||||||           ||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||    
T  52468379 tagaacattgttctttt----aaaaaaatacgtttttattttattacagacctcttttcacctacagagccgagcctccgaattcgta 52468462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 27112022 - 27112135
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||| ||| ||||| ||| ||||||| | |   |||| |||||||||||||||||||||    
T  27112022 ggagggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtc---accttgtatttatcttttaaaaaatt 27112118  T
Q  134 taaattgaacattgttc 150  Q
    |||||||||||||||||    
T  27112119 taaattgaacattgttc 27112135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 36118571 - 36118383
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||| |||||| |||||||||| | ||||| ||||||  ||||||||| ||  |||||||||||   |||| |||||||||||||||||||||||    
T  36118571 agggtggttagaggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgac---accttgtatttatcttttaaaaaattta 36118475  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||| ||||||||||| |||           |||||||||||||||||||   ||||||||||||||||  ||||| | |||| ||||||| |||||    
T  36118474 aatagaacattgttcattt----aaaaaaatacgtttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcgtaggaacg 36118383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 24396926 - 24397114
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| ||  ||||||   ||  |||||  ||||||||||||||||||||    
T  24396926 ggagggtagtttgaggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatat---actgcaccttatatttatcttttaaaaaatt 24397022  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaag 227  Q
    |||||  || |||||||||||           ||||||||||||||||||||   |||||||||||||||| || || |||| ||||| |||||    
T  24397023 taaataaaatattgttctttt--aaaaaaaaatacgtttttattttattacatgtctcttttcacttacagagctgagcctctggatttgtaag 24397114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 39329507 - 39329317
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||| ||||||| |||||| | ||  | |||||| |||||||||| ||  |||||||| ||   |||| |||||||||||||||||||||    
T  39329507 ggagggtggtttgatgttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaac---accttgtatttatcttttaaaaaatt 39329411  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    ||||  |||||||||||||||           || |||||||||||||||| |||||||||||||||||||  |||| |||||  ||||||| ||||    
T  39329410 taaagagaacattgttctttt---aaaaaaaatatgtttttattttattacggacctcttttcacttacagaaccgagcctccaaattcgtaggaac 39329317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 36178665 - 36178778
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||| | ||| ||||||||| | ||||| ||||||| ||||||||| ||| |||||||||||   |||| |||||||||||||||| ||||    
T  36178665 ggagggtggtttg-gattcttcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgac---accttgtatttatcttttaaataatt 36178760  T
Q  134 taaattgaacattgttct 151  Q
    ||||| ||||||||||||    
T  36178761 taaatagaacattgttct 36178778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 2135428 - 2135324
Alignment:
Q  42 gtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattga 141  Q
    |||||||||||||||| |||| ||||||| | || |||||||| ||| ||| |||||||||||   |||| |||||||||||||||||||||||||| ||    
T  2135428 gtttgaggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgac---accttgtatttatcttttaaaaaatttaaataga 2135332  T
Q  142 acattgtt 149  Q
    | ||||||    
T  2135331 atattgtt 2135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 4168002 - 4167911
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaat 132  Q
    |||| |||||||||||||||||||| | ||||| ||||||||||||||||| ||| ||||||   ||| ||||| ||||||||||||||||||||    
T  4168002 ggtgatttgaggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatat---acggcaccttgtatttatcttttaaaaaat 4167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 40217226 - 40217325
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||||||||||||| |||||||||||| || || |||||| |||||| ||| ||| ||||||   |||||||||  ||||||||||||||||||||||    
T  40217226 agggtggtttgaggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatat---acgacaccttatatttatcttttaaaaaattta 40217322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 10042113 - 10041923
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||| ||||||||||||| |||||| | ||||| ||||||| ||| ||||| ||  ||| ||   ||| ||||| |||||||| |||| |||||||||    
T  10042113 agggtgatttgaggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacat---acggcaccttgtatttatttttttaaaaattta 10042017  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||| |||||||||||||||           |||| |||||||||| ||| |||||||||||||||||||  | |||||||| |||||||| |||||    
T  10042016 aatagaacattgttctttt--aaaaaaaaatacgcttttattttactacggacctcttttcacttacagaactgaacctcccgattcgtaggaacg 10041923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 36362984 - 36362869
Alignment:
Q  35 gagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattt 134  Q
    |||||||||||||||||||| ||||||||| ||||| ||| ||| ||||||||| | | ||||||||| |   || | ||||||||||||||||||||||    
T  36362984 gagggtggtttgaggttcct-atgtatatggtagtgatttccacatttgggtgtattgcatatatacggc---actttgtatttatcttttaaaaaattt 36362889  T
Q  135 aaattgaacattgttctttt 154  Q
    |||  || ||||||||||||    
T  36362888 aaacagagcattgttctttt 36362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 51692032 - 51691913
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttg--ggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaa 131  Q
    ||||||||||||||||||| || |||||||| ||||| ||||||| |||   |||||  || ||||||||| |   |||| |||||||||||||||||||    
T  51692032 ggagggtggtttgaggttcatcgtgtatatggtagtgattttcactttttttggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaa 51691936  T
Q  132 tttaaattgaacattgttctttt 154  Q
    ||||||| |||||||| ||||||    
T  51691935 tttaaatagaacattgctctttt 51691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 54780783 - 54780886
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  54780783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 54780879  T
Q  148 ttctttt 154  Q
     ||||||    
T  54780880 ctctttt 54780886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 37745021 - 37744916
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatctttt-aaaaaatttaa 136  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||||||| ||| ||| ||||||    ||||||||  |||||||||||| |||||||||||    
T  37745021 ggtggtttgaggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatat---gcgacaccttatatttatcttttaaaaaaatttaa 37744925  T
Q  137 attgaacat 145  Q
    || ||||||    
T  37744924 atagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 24614021 - 24614137
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaac 212  Q
    |||||||||||||||||||||||||| ||||||||||||||            ||| |||| |||||||||| | ||||||||||||||||| || ||||    
T  24614021 gtatttatcttttaaaaaatttaaatagaacattgttcttt-aaaaaaaaaaatacatttt-attttattacgggcctcttttcacttacagagctgaac 24614118  T
Q  213 ctccggattcgtaagaacg 231  Q
    |||| ||||||||||||||    
T  24614119 ctccagattcgtaagaacg 24614137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 45656167 - 45656279
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||| ||||||||| | | ||| ||||||| ||||| | | ||| ||||||| |||   |||| | |||||||||||||||||||    
T  45656167 ggagggtggtttgaggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgac---accttgcatttatcttttaaaaaatt 45656263  T
Q  134 taaattgaacattgtt 149  Q
    |||||  |||||||||    
T  45656264 taaataaaacattgtt 45656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 2790842 - 2790739
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || |||||||||     ||||  ||||||||||||||||||| ||||| ||||||||    
T  2790842 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggt---accttatatttatcttttaaaaaatataaatagaacattg 2790746  T
Q  148 ttctttt 154  Q
    |||||||    
T  2790745 ttctttt 2790739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 10978906 - 10979009
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||| | |||||||  || |||||||||||   |||| |||||||||||||||||||| ||||| ||||||||    
T  10978906 ggttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatataaatagaacattg 10979002  T
Q  148 ttctttt 154  Q
     ||||||    
T  10979003 ctctttt 10979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 43455632 - 43455529
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  43455632 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 43455536  T
Q  148 ttctttt 154  Q
     ||||||    
T  43455535 ctctttt 43455529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 47128993 - 47129096
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||| |||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  47128993 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 47129089  T
Q  148 ttctttt 154  Q
    |||||||    
T  47129090 ttctttt 47129096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 38209692 - 38209590
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  38209692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 38209596  T
Q  148 ttcttt 153  Q
     |||||    
T  38209595 ctcttt 38209590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 39655343 - 39655252
Alignment:
Q  60 atatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||| || |||||||||||||||||  || |||||| ||  || || | |||||||||||||||||||||||||| |||||||||||||||    
T  39655343 atatgataatgattttcacctttgggtgtaccgcatatatgcg--ga-actttgtatttatcttttaaaaaatttaaatagaacattgttctttt 39655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 30507161 - 30507120
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  30507161 gtatttatcttttaaaaaatttaaatagaacattgttctttt 30507120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 34027585 - 34027681
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||||||||||   ||||  |||||||||||||||||  || |||||||||||   ||||  ||||||||||||||||||| ||||| ||||||||    
T  34027585 ggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattg 34027681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 32128614 - 32128693
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||  || |||||||||||   ||||  ||||||||||||||||||| ||||| |||||||| ||||||    
T  32128614 ttttcacctttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattgctctttt 32128693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 35779427 - 35779325
Alignment:
Q  47 aggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    |||||||||||||||| | || |  |||||||||||||||||  || |||||||||||   |||| |||||||||||||||||||| | ||| |||||||    
T  35779427 aggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatat-aatagaacatt 35779332  T
Q  147 gttcttt 153  Q
    | |||||    
T  35779331 gctcttt 35779325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 37777324 - 37777229
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| |||||||    
T  37777324 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaatataaatagaacatt 37777229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 15735087 - 15735196
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||| |||||||||||||| | || || ||||||  ||| |||||     |||||||||||| |   | |||||||||||||||||||||    
T  15735087 ggagggtggtttgaagttcctcatgtatacggtaatgattttcattttttggtgt-----atatatacgacgtc---ttgtatttatcttttaaaaaatt 15735178  T
Q  134 taaattgaacattgttct 151  Q
    ||||| ||||| ||||||    
T  15735179 taaatagaacactgttct 15735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 5893134 - 5893180
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctcc 216  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  5893134 tttttattttattacggacctcttttcacttacagagccgagcctcc 5893180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 4167911 - 4167846
Alignment:
Q  166 tacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||||||||| | ||||||||||||||||    ||| |||||||||||||| |||||    
T  4167911 tacgtttttattttattacgggcctcttttcacttacaaaatcgagcctccggattcgtacgaacg 4167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 34768675 - 34768572
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | || |  ||||||||| |||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  34768675 ggttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 34768579  T
Q  148 ttctttt 154  Q
     ||||||    
T  34768578 ctctttt 34768572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 1105538 - 1105632
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    |||| |||||||||||| ||||  ||||||||| | |||||  || ||||||||||    |||| |||||||||||||||||||| ||||| ||||||    
T  1105538 ggttgctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgat---accttgtatttatcttttaaaaaatataaatagaacat 1105632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 48209302 - 48209349
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  48209302 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 48209349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 55255319 - 55255366
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  55255319 caccttgtatttatcttttaaaaaatataaatggaacattgctctttt 55255366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 9578708 - 9578662
Alignment:
Q  108 acctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  9578708 accttgtatttatcttttaaaaaatataaatagaacattgctctttt 9578662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 11906887 - 11906826
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||||| | |||||||||||||| |  ||||| |||||| ||||||| |||||    
T  11906887 tttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacg 11906826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 13460265 - 13460306
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaaca 144  Q
    ||||||||| |||||||||||||||||||| ||||| |||||    
T  13460265 acgacaccttgtatttatcttttaaaaaatataaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 23508560 - 23508515
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatt-taaattgaacattg 147  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  23508560 acgacaccttgtatttatcttttaaaaaattataaatagaacattg 23508515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 15167529 - 15167338
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||| ||||||   || |||| |  ||||||||||||||||||||||    
T  15167529 agggtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatat---acaacactttatatttatcttttaaaaaattta 15167433  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||| |||||||||||||||           ||||||||||||||||||| ||| | ||||||||||||| || || ||| | |||||||| |||||    
T  15167432 aatagaacattgttctttt-aaaaataaaatacgtttttattttattacggactttttttcacttacagagcagagccttcagattcgtaggaacg 15167338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 41677290 - 41677098
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatctttt-aaaaaat 132  Q
    |||||||||||||||||||||||||||||   ||||| ||||||||||| | ||| ||| |||||||   ||||| || ||||||||||||| |||||||    
T  41677290 ggagggtggtttgaggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatata---cgacatcttgtatttatcttttaaaaaaat 41677194  T
Q  133 ttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    |||||| |||||||||||||||           |||||||||||||||||| ||  ||||||||||| |||| ||||| |||||| ||||||| ||||    
T  41677193 ttaaatagaacattgttctttt--aaaaaaaaatacgtttttattttattataggtctcttttcactcacagagccgagcctccgaattcgtaggaac 41677098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 5973219 - 5973037
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||||||||||||||||| |||||| | || || |||||| || |||||||     ||||||   ||||||||| |||||||||||||||||||||||||    
T  5973219 ggtggtttgaggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatat---acgacaccttgtatttatcttttaaaaaatttaaa 5973123  T
Q  138 ttgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaa 226  Q
    | |||||||||||||||           ||| |||||||||||||||||||||||||||| |||||| ||| | |||||||| ||||||    
T  5973122 tagaacattgttctttt---aaaacgaatacatttttattttattacagacctcttttcatttacagagccaagcctccggaatcgtaa 5973037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 15078750 - 15078936
Alignment:
Q  39 gtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaat 138  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| | | ||||||   ||  |||||  ||||||||||||||||| |||||||    
T  15078750 gtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatat---acagcaccttatatttatcttttaaaaattttaaat 15078846  T
Q  139 tgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
     ||||||| |||||||           ||||||||||||||||||| ||| ||||||||||||||| || || ||| | |||||||| |||||    
T  15078847 agaacattattctttt---aaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacg 15078936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 23941207 - 23941095
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||||||||||| | |||||||| ||| |||||| |||||||||| |||  |||||   | ||||||| |||||||||||||||||||||    
T  23941207 ggagggtggtttgaggttcctcgtatatatgattgtgattttcatctttgggtgtatcgcttatat---atgacaccttgtatttatcttttaaaaaatt 23941111  T
Q  134 taaattgaacattgtt 149  Q
    |||||  |||||||||    
T  23941110 taaataaaacattgtt 23941095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 39332520 - 39332405
Alignment:
Q  35 gagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattt 134  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  ||  |||||   | ||||||| ||||||||||||| ||||| ||    
T  39332520 gagggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatat---atgacaccttgtatttatctttttaaaaaatt 39332424  T
Q  135 aaattgaacattgttcttt 153  Q
    |||| ||||||||||||||    
T  39332423 aaatagaacattgttcttt 39332405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 34048823 - 34048705
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||| ||||| ||||||||||||   ||||| |||||| |||||||||| || ||||||||  ||||||| | |||||||||||||||||  ||    
T  34048823 ggagggtggtatgaggatcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatat-acgacacattgtatttatcttttaaaatgtt 34048725  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||||||||||||    
T  34048724 taaatagaacattgttcttt 34048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 7944634 - 7944521
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||||||     ||||||   ||| ||||| |||||||| ||||||||||||||||    
T  7944634 ggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatat---acggcaccttgtatttattttttaaaaaatttaaa 7944538  T
Q  138 ttgaacattgttctttt 154  Q
    |  ||||||||||||||    
T  7944537 taaaacattgttctttt 7944521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 11290175 - 11290288
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||||||||||||| |||||||||| | ||||| |||||||||||| ||||     ||||||   ||||||||| |||||||||||||||||||||||||    
T  11290175 ggtggtttgaggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatat---acgacaccttgtatttatcttttaaaaaatttaaa 11290271  T
Q  138 ttgaacattgttctttt 154  Q
    |  ||||||||||||||    
T  11290272 taaaacattgttctttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 14510094 - 14509983
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggtttt-cacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaa 136  Q
    |||||||||||||| |||||||||| | ||||| |||| ||| |||||||||  ||||||||     ||||||||  ||||| |||||||||||||||||    
T  14510094 ggtggtttgaggttactcatgtatacggtagtgatttttcacatttgggtgtaccgtatata-----cgacaccttatatttgtcttttaaaaaatttaa 14510000  T
Q  137 attgaacattgttcttt 153  Q
    |||||||||||||||||    
T  14509999 attgaacattgttcttt 14509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 5942683 - 5942777
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaa 131  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||  || | ||||   |||||| || |||||||||||||||||||    
T  5942683 ggagggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatat---acgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 30674481 - 30674334
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttttnnnnnnnnnnntacgtt 171  Q
    |||||||||||| |||| ||| |||||||||||   ||||  |||||||||||||||| |||||||| ||||||||||||||            ||||||    
T  30674481 ttttcacctttgagtgtatcgcatatatacgac---accttatatttatcttttaaaacatttaaatagaacattgttcttt---aaaaaaaaatacgtt 30674388  T
Q  172 tttattttattacagacctcttttcacttacagtgccgaacctccggattcgta 225  Q
    |||||||||||||   ||||||||||||||||| ||||| ||||| ||||||||    
T  30674387 tttattttattacgagcctcttttcacttacagagccgagcctccagattcgta 30674334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 8646201 - 8646309
Alignment:
Q  42 gtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattga 141  Q
    |||||||||| || ||||||| | ||||| ||||||| |||| |||| | | ||||||||||    |||| |||||||||||||||||||||||||| ||    
T  8646201 gtttgaggtttcttatgtatacggtagtgattttcacatttgcgtgtat-gcatatatacgat---accttgtatttatcttttaaaaaatttaaataga 8646296  T
Q  142 acattgttctttt 154  Q
    |||||||||||||    
T  8646297 acattgttctttt 8646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 5721546 - 5721654
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||| |||||||||  ||  |||||   | | ||||| ||||||||||||||||||| |    
T  5721546 ggagggtggtttgaggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatat---agggcaccttgtatttatcttttaaaaaaat 5721642  T
Q  134 taaattgaacat 145  Q
    ||||| ||||||    
T  5721643 taaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 45475818 - 45475921
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  45475818 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 45475914  T
Q  148 ttctttt 154  Q
     ||||||    
T  45475915 ctctttt 45475921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 5860846 - 5860744
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||| |||||||||||| ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  5860846 ggtttctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 5860750  T
Q  148 ttcttt 153  Q
     |||||    
T  5860749 ctcttt 5860744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 25561607 - 25561496
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||||||||||||||||||||| |  |||| ||||||| ||||||| | ||| ||||||   ||| ||||| ||||||||| ||||||| |||||    
T  25561607 agggtggtttgaggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatat---acggcaccttgtatttatc-tttaaaagattta 25561513  T
Q  136 aattgaacattgttctt 152  Q
    ||| ||||||| |||||    
T  25561512 aatagaacattattctt 25561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 9108551 - 9108596
Alignment:
Q  108 acctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||    
T  9108551 accttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 10917392 - 10917495
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| || |||||    
T  10917392 ggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaatataaatagatcattg 10917488  T
Q  148 ttctttt 154  Q
    || ||||    
T  10917489 ttttttt 10917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 23606731 - 23606628
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||| ||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  23606731 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 23606635  T
Q  148 ttctttt 154  Q
     ||||||    
T  23606634 ctctttt 23606628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 30883330 - 30883433
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   || | |||||||||||||||||||| ||||| ||||||||    
T  30883330 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---acattgtatttatcttttaaaaaatataaatagaacattg 30883426  T
Q  148 ttctttt 154  Q
     ||||||    
T  30883427 ctctttt 30883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 23798363 - 23798261
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||| |||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  23798363 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 23798267  T
Q  148 ttcttt 153  Q
     |||||    
T  23798266 ctcttt 23798261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 34868223 - 34868177
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  34868223 caccttgtatttatcttttaaaaaatttaaatagaacattattcttt 34868177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 41879239 - 41879285
Alignment:
Q  108 acctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||    
T  41879239 accttgtatttatcttttaaaaaatataaatagaacattgttctttt 41879285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 13534788 - 13534686
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |     || |||||||||||||||||||| ||||| ||||||||    
T  13534788 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca----cttgtatttatcttttaaaaaatataaatagaacattg 13534693  T
Q  148 ttctttt 154  Q
     ||||||    
T  13534692 ctctttt 13534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 13624328 - 13624226
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |     || |||||||||||||||||||| ||||| ||||||||    
T  13624328 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca----cttgtatttatcttttaaaaaatataaatagaacattg 13624233  T
Q  148 ttctttt 154  Q
     ||||||    
T  13624232 ctctttt 13624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 2952323 - 2952220
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||| || |||||||  || ||||||||| |   || | |||||||||||||||||||| ||||| ||||||||    
T  2952323 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggc---actttgtatttatcttttaaaaaatataaatagaacattg 2952227  T
Q  148 ttctttt 154  Q
     ||||||    
T  2952226 ctctttt 2952220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 38009191 - 38009151
Alignment:
Q  114 tatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  38009191 tatttatcttttaaaaattttaaatagaacattgttctttt 38009151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 38009138 - 38009076
Alignment:
Q  169 gtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||||||||||||||| ||| |||||||| ||||||  |||| ||||||||||| || |||||    
T  38009138 gtttttattttattacggacttcttttcagttacagaaccgagcctccggattcataggaacg 38009076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5942784 - 5942845
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||||| | |||||||||||||||||   ||| | |||||||||||| |||||    
T  5942784 tttttattttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaacg 5942845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 34812743 - 34812682
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||||||||||| ||| |||||||||||||||||| | ||| || ||||||| ||| |||||    
T  34812743 tttttattttatgacatacctcttttcacttacagagtcgagcccccggatttgtaggaacg 34812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 374 - 257
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||  || |||||||||||   |||| |||||||||||||||||||||    
T  374 ggagggtggtttgaggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatt 278  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  277 taaatagaacattgttctttt 257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 38547151 - 38547035
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  |  ||||||   ||| ||||| |||||||||||||||||||||    
T  38547151 ggagggtggtttgaggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatat---acggcaccttgtatttatcttttaaaaaatt 38547055  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| |||||||| |||||    
T  38547054 taaatagaacattgatcttt 38547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 45758496 - 45758685
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||| ||| |   |||||||| ||   |||| | |||||||||||||||||||||||    
T  45758496 ggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaac---accttgcatttatcttttaaaaaatttaaa 45758592  T
Q  138 ttgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    | |||||||||||||||           ||| ||||||||||||| | ||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  45758593 tagaacattgttcttttaaaaaaaata-tacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaacg 45758685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 39134838 - 39134644
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatc-ttttaaaaaat 132  Q
    |||||||||||||||||||||||||||||   ||||| || |||||||||||||| | | ||||||   ||  ||||| ||||||||| |||||||||||    
T  39134838 ggagggtggtttgaggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatat---acagcaccttgtatttatctttttaaaaaat 39134742  T
Q  133 ttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||||| |||||||||||||||           |||||||||||||||||||    |||||||||||||| | ||||| |||||||||||||| |||||    
T  39134741 ttaaatagaacattgttctttt-aaaaaaaaaatacgtttttattttattacgagtctcttttcacttacggagccgagcctccggattcgtaggaacg 39134644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 440 - 523
Target Start/End: Complemental strand, 543382 - 543299
Alignment:
Q  440 aaacagaatagtgttgatcatttctaattttctaacttttggctcaaccctttaaatacactcattgacaaggccttggttaaa 523  Q
    ||||| ||||||||||||||||| ||| |||||| ||||||||||| | |||||||||||||| |||||||||||| |||||||    
T  543382 aaacaaaatagtgttgatcatttataagtttctagcttttggctcatctctttaaatacactccttgacaaggcctcggttaaa 543299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 26803946 - 26804059
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||   |||| ||| ||||||   |||||| || |||||||||||||||||||||    
T  26803946 ggagggtggtttgaggtttctcatgtatacggtagtgattttcacctt---gtgtatcgcatatat---acgacatcttgtatttatcttttaaaaaatt 26804039  T
Q  134 taaattgaacattgttcttt 153  Q
    |||||  | |||||||||||    
T  26804040 taaatatagcattgttcttt 26804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 43235881 - 43235720
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttt--taaaaaattta 135  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||     ||||||   |||||| || ||||||||||||   ||||||||||    
T  43235881 ggtggtttgaggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatat---acgacatcttgtatttatctttaaaaaaaaattta 43235785  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttaca 203  Q
    ||| ||||||| ||||||            ||| ||||||||||||||||| ||||||||||||||||    
T  43235784 aatagaacatttttcttt---agaaaaaaatacatttttattttattacaggcctcttttcacttaca 43235720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 17168968 - 17169064
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||||| ||||  |||||||||||||||||  || ||||||   || ||||||  ||||||||||||||||||| ||||| ||||||||    
T  17168968 ggttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatat---acaacaccttatatttatcttttaaaaaatataaatagaacattg 17169064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 27559649 - 27559745
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   |||||||||  ||||||||||||||||||| ||||| ||||||||    
T  27559649 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acgacaccttatatttatcttttaaaaaatataaatagaacattg 27559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 5027561 - 5027664
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||||| |||||| ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  5027561 ggttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 5027657  T
Q  148 ttctttt 154  Q
     ||||||    
T  5027658 ctctttt 5027664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 5316692 - 5316795
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  5316692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 5316788  T
Q  148 ttctttt 154  Q
     ||||||    
T  5316789 ctctttt 5316795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 23185439 - 23185542
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  23185439 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 23185535  T
Q  148 ttctttt 154  Q
     ||||||    
T  23185536 ctctttt 23185542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 44655753 - 44655856
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||| |||| |||||||  || |||||||||||   |||| |||||||||||||||||||| ||||| ||||||||    
T  44655753 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatataaatagaacattg 44655849  T
Q  148 ttctttt 154  Q
     ||||||    
T  44655850 ctctttt 44655856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 38853527 - 38853637
Alignment:
Q  40 tggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaatt 139  Q
    ||||||||||||| ||||||||| | ||||| ||||||||||||| | |     |||||||||||   |||| ||||||||| ||||||||||||||||     
T  38853527 tggtttgaggttc-tcatgtatacggtagtgattttcacctttggatatacaacatatatacgac---accttgtatttatcatttaaaaaatttaaata 38853622  T
Q  140 gaacattgttctttt 154  Q
    ||||| |||||||||    
T  38853623 gaacactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 9173124 - 9173026
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||||||| |||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  9173124 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 9173028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 9181106 - 9181008
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||||||| |||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  9181106 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 9181010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 21741029 - 21740935
Alignment:
Q  57 tgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||| ||||  ||||||||| ||||||| ||| ||||||||| |   |||| ||||||||||||||||||||  |||| |||||||| ||||||    
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatatacggc---accttgtatttatcttttaaaaaatacaaatagaacattgctctttt 21740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 50881494 - 50881545
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  50881494 acgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 50881545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 33170757 - 33170874
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||| ||||| |||||||||| | ||||| |||||||| || |||||  || ||||||   || |||| | |||||||  ||||||||||||    
T  33170757 ggagggtggtttaaggtttctcatgtatacggtagtgattttcaccatttggtgtaccgcatatat---acaacacattgtatttacgttttaaaaaatt 33170853  T
Q  134 taaattgaacattgttctttt 154  Q
    |||||  ||||||||| ||||    
T  33170854 taaatataacattgttttttt 33170874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 6771801 - 6771897
Alignment:
Q  46 gaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    |||||||||| |||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||    
T  6771801 gaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacat 6771897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 5533314 - 5533495
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatctttt-aaaaaatttaa 136  Q
    ||||||||||| ||||||||||||| | ||||| ||||||||||||  |||     ||||||   ||| ||||| || |||||||||| |||||||||||    
T  5533314 ggtggtttgagtttcctcatgtatacggtagtgattttcacctttgattgtacatcatatat---acggcaccttgtgtttatcttttaaaaaaatttaa 5533410  T
Q  137 attgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgta 225  Q
    || ||| |||||||||||           ||| ||||||||||||||| |  |||||||||||||||| | | | ||||||||||||||    
T  5533411 atagaatattgttctttt----aaaaaaatacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgta 5533495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 14146312 - 14146415
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||| || |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| |||||| |    
T  14146312 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacatcg 14146408  T
Q  148 ttctttt 154  Q
     ||||||    
T  14146409 ctctttt 14146415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 50146307 - 50146411
Alignment:
Q  47 aggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    |||||||||||||||| | || || |||| |||||||||| | ||  | |||||| ||| ||||| | |||||||||| ||||| ||||||| |||||||    
T  50146307 aggttcctcatgtatagggtaatgatttttacctttgggtctatc--acatatac-acggcaccttgcatttatctttcaaaaagtttaaatagaacatt 50146403  T
Q  147 gttctttt 154  Q
    ||||||||    
T  50146404 gttctttt 50146411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 4971719 - 4971617
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||| | |||||||  || |||||||||     |||| |||||||||||||||||||| ||||| ||||||||    
T  4971719 ggttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggt---accttgtatttatcttttaaaaaatataaatagaacattg 4971623  T
Q  148 ttcttt 153  Q
     |||||    
T  4971622 ctcttt 4971617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 27906774 - 27906727
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  27906774 caccttgtatttatcttttaaaaaatataaatggaacattgctctttt 27906727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 1366979 - 1366878
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||| |||||| | ||||  |||||| ||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  1366979 ggttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 1366883  T
Q  148 ttctt 152  Q
     ||||    
T  1366882 ctctt 1366878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 40501893 - 40501804
Alignment:
Q  46 gaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaat 138  Q
    ||||||| ||||||||| | ||||  |||| ||||||||||||  || |||||||||||   ||||  ||||||||||||||||||| |||||    
T  40501893 gaggttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaat 40501804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 51607540 - 51607453
Alignment:
Q  49 gttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaat 138  Q
    |||||||||||||| | ||||  ||||||| |||||||||  || |||||||||  | |||||  ||||||||||||||||||| |||||    
T  51607540 gttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacg--gccaccttatatttatcttttaaaaaatataaat 51607453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 6889685 - 6889726
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  6889685 gtatttatcttttaaaaaatataaatagaacattgctctttt 6889726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 6891531 - 6891572
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  6891531 gtatttatcttttaaaaaatataaatagaacattgctctttt 6891572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 16140069 - 16140161
Alignment:
Q  50 ttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    ||||||||||||| | ||||  ||||||||| | |||||  || |||||||| ||   |||| |||||||||||||||||||| ||||| ||||||    
T  16140069 ttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaac---accttgtatttatcttttaaaaaatataaatagaacat 16140161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 17322662 - 17322621
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||| ||||||| ||||| |||||||||||||||    
T  17322662 gtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 22865500 - 22865459
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  22865500 gtatttatcttttaaaaaatataaatagaacattgctctttt 22865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 7398438 - 7398555
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||  ||||||   | | ||||| |||||||||||| ||||||||    
T  7398438 ggagggtggtttgaggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatat---atggcaccttgtatttatctttcaaaaaatt 7398534  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  7398535 taaatagaacattgttctttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 27237538 - 27237421
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| | |   ||  |||||||| ||   |||| |||||||||||||||||||||    
T  27237538 ggagggtggtttgaggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaac---accttgtatttatcttttaaaaaatt 27237442  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  27237441 taaatagaacattgttctttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 2611369 - 2611185
Alignment:
Q  42 gtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattga 141  Q
    |||||||||||||||||||||   | ||| |||||||| ||| ||||  || |||||||||||   |||| |||||||||||||||||||||||||| ||    
T  2611369 gtttgaggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatttaaataga 2611273  T
Q  142 acattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||||||||||||           ||| ||||||||||||||||  ||||||||||||| |||  |||| ||||||||||| || |||||    
T  2611272 acattgttctttt--aaaaaaaaatacttttttattttattacaagcctcttttcacttgcagaaccgagcctccggattcataggaacg 2611185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 23859060 - 23859251
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||||| |||||||||||| | ||||  |||||| |||||||||| ||| ||||||   |||  || | |||||||||||||||||||||    
T  23859060 ggagggtggtttgaggatcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatat---acggtacattgtatttatcttttaaaaaatt 23859156  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||| ||||||| |||| ||           |||||||||||||||||||||  |||||||||||||||| | ||| |||||  ||||||| |||||    
T  23859157 taaatagaacattattctctt---aaacaaaatacgtttttattttattacaggtctcttttcacttacagagtcgagcctccaaattcgtaggaacg 23859251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 9021914 - 9021799
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||  || ||||||||| |   || | |||||||||||||||||||||    
T  9021914 ggagggtggtttgaggt-cctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggc---acattgtatttatcttttaaaaaatt 9021819  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| | | ||||||||||    
T  9021818 taaatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 12419610 - 12419419
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||   |||||| |||||| |||||| ||| ||  | ||||| |     || | |||||||||||||||||||||    
T  12419610 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggt---acattgtatttatcttttaaaaaatt 12419514  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||| |||||||||||||||           |||||| |||||||||||| | ||||||||||||||||  ||||| ||||||||||| || |||||    
T  12419513 taaatagaacattgttctttt---aaaaaaaatacgttgttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacg 12419419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 6765794 - 6765680
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||||||||||||| ||| | |||| | ||||| ||||||||||||| |||   |  |||||   ||||||||| |||||||||||||||||||||||    
T  6765794 agggtggtttgaggttactcttatatacggtagtgattttcacctttggatgtacggcttatat---acgacaccttgtatttatcttttaaaaaattta 6765698  T
Q  136 aattgaacattgttcttt 153  Q
    ||| ||||||||||||||    
T  6765697 aatagaacattgttcttt 6765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 12981315 - 12981502
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||||||||||||||||||| ||||   ||||| |||||||||||| ||||  ||  |||||| |  || |||| ||||||||||||||||||| |||    
T  12981315 agggtggtttgaggttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatg--ga-accttgtatttatcttttaaaaaaatta 12981411  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||| ||||||| |||||||            || |||||||||||||||   ||||||||||| |||||  ||||||||||||||||||| |||||    
T  12981412 aatagaacattcttcttttataaaaa-----acatttttattttattacgagcctcttttcacctacagaaccgaacctccggattcgtaggaacg 12981502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 36891565 - 36891682
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||| ||||||||||||||||||||||| | ||||| ||||||||||||| |||  || ||||||   || |||| | ||||| ||| ||||||||||     
T  36891565 ggaggatggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatat---acaacacattgtattcatcatttaaaaaata 36891661  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| ||||||| |||||||    
T  36891662 taaatagaacattattctttt 36891682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 23020589 - 23020435
Alignment:
Q  43 tttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaa 142  Q
    ||||| |||||||||||||| | ||||| |||||||||||| |||||| | ||||||   || ||||||  ||||||||||||||||||| |||||  ||    
T  23020589 tttgaagttcctcatgtatacggtagtgattttcacctttgagtgtgt-gcatatat---acaacaccttatatttatcttttaaaaaatctaaatgaaa 23020494  T
Q  143 cattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacag 204  Q
    | ||||||||||           ||| ||||||||||||||| |||||||||||||||||||    
T  23020493 cgttgttctttt---aaaaaaaatacatttttattttattacggacctcttttcacttacag 23020435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 29077221 - 29077324
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| | |||||  || |||||||||||   |||| |||||||||||||||||||| ||||| ||||||||    
T  29077221 ggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatataaatagaacattg 29077317  T
Q  148 ttctttt 154  Q
     ||||||    
T  29077318 ctctttt 29077324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 48983945 - 48983842
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || |||||||   ||||||||  ||||||||||||||||||| ||||| || |||||    
T  48983945 ggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatata---cgacaccttatatttatcttttaaaaaatataaatagatcattg 48983849  T
Q  148 ttctttt 154  Q
    || ||||    
T  48983848 ttttttt 48983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 21763702 - 21763586
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||| |||||| ||| | ||| || || ||||| ||||||| ||| ||||| ||| ||||||||||    || | |||||||||||||||||||||    
T  21763702 ggagggtgatttgagattcttgatgcatctggtagtgattttcactttttggtgtatcgcatatatacgat---actttgtatttatcttttaaaaaatt 21763606  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||| ||||||||    
T  21763605 taaatagaacaatgttcttt 21763586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 8171640 - 8171537
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||| || |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  8171640 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 8171544  T
Q  148 ttctttt 154  Q
     ||||||    
T  8171543 ctctttt 8171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 20091382 - 20091279
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| || |||||    
T  20091382 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaatataaatagatcattg 20091286  T
Q  148 ttctttt 154  Q
    || ||||    
T  20091285 ttttttt 20091279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 20153190 - 20153289
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||||||| | ||||||||||| |  |||| |||||| |||||||| | ||| ||||||   || |||| | |||||||||||||||||||||||    
T  20153190 agggtggtttgagatccctcatgtatacggcagtgattttcatctttgggtttatcgcatatat---acaacactttgtatttatcttttaaaaaattta 20153286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 23744853 - 23744900
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||||    
T  23744853 caccttgtatttatcttttaaaaaatttaattagaacattgttctttt 23744900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 36902973 - 36902924
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctt 152  Q
    |||||| || |||||||||| ||||||||||||||| |||||||||||||    
T  36902973 acgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 9014217 - 9014177
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  9014217 gtatttatcttttaaaaaatttaaataaaacattgttcttt 9014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9014877 - 9014825
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggt 86  Q
    |||||||| ||||||||| |||||||||| | ||||| |||||||||||||||    
T  9014877 ggagggtgatttgaggttactcatgtatacggtagtgattttcacctttgggt 9014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 18776867 - 18776764
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||| |||||||||| | ||||  ||||||| | |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  18776867 ggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 18776771  T
Q  148 ttctttt 154  Q
     ||||||    
T  18776770 ctctttt 18776764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 26254018 - 26254097
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||| ||||||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  26254018 ttttcatctttgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattgctctttt 26254097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 26917715 - 26917655
Alignment:
Q  171 ttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||||||||||||| ||||||||||||||||||| | | | ||||  ||||||||||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaacg 26917655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 23551172 - 23551092
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaa 131  Q
    ||||||||||||||| | ||||  ||||||||||||| |||  || |||||||   ||||||||  ||||||||||||||||||    
T  23551172 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatata---cgacaccttatatttatcttttaaaaaa 23551092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 2477700 - 2477587
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||| ||| ||||| ||| ||||||| | |   |||| |||||||||||||||||||||    
T  2477700 ggagggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtc---accttgtatttatcttttaaaaaatt 2477604  T
Q  134 taaattgaacattgttc 150  Q
    |||||||||||||||||    
T  2477603 taaattgaacattgttc 2477587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 20611780 - 20611889
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||| ||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||   ||||||||| ||||||||| |||||||||||    
T  20611780 ggagggtagtttgaggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatat---acgacaccttgtatttatcgtttaaaaaatt 20611876  T
Q  134 taaattgaacatt 146  Q
    ||| | |||||||    
T  20611877 taagtagaacatt 20611889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 28075787 - 28075883
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||||||||||| ||| ||||||   ||| |||||  ||||||||||||||||||| ||||| ||||||||    
T  28075787 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatat---acggcaccttatatttatcttttaaaaaatataaatagaacattg 28075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 6159430 - 6159541
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||||||||||||| || |||| | ||||| ||| ||||||||  |||  || |||||||||||   || | |||||||||||||||||||| ||    
T  6159430 agggtggtttgaggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgac---acattgtatttatcttttaaaaaatata 6159526  T
Q  136 aattgaacattgttc 150  Q
    ||| |||||||||||    
T  6159527 aatagaacattgttc 6159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 680 - 752
Target Start/End: Original strand, 8295357 - 8295428
Alignment:
Q  680 tcatgtttggtgagagagtaatcaagatggggttgcatggaaggagtgagtggaccaagtgtgggaatgagga 752  Q
    ||||||||||||  |||||  |||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  8295357 tcatgtttggtggaagagtgttcaagatgga-ttgcatggaaggagttagtggaccaagtgtgggaatgagga 8295428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 13727501 - 13727398
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  13727501 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 13727405  T
Q  148 ttctttt 154  Q
     ||||||    
T  13727404 ctctttt 13727398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 20711822 - 20711719
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  20711822 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 20711726  T
Q  148 ttctttt 154  Q
     ||||||    
T  20711725 ctctttt 20711719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 21479498 - 21479601
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  21479498 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 21479594  T
Q  148 ttctttt 154  Q
     ||||||    
T  21479595 ctctttt 21479601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 21183788 - 21183690
Alignment:
Q  37 gggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaa 136  Q
    |||||||||||||||||||||||||| | ||||| |||||| ||||||||||  |  ||||||   |||  || | ||||||||||||||||||||||||    
T  21183788 gggtggtttgaggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatat---acgctactttgtatttatcttttaaaaaatttaa 21183692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 34397859 - 34397964
Alignment:
Q  46 gaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    |||||||||||||| || ||||||  |||| |||||| |||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||    
T  34397859 gaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtc---accttgtatttatcttttaaaaaatataaatagaacat 34397955  T
Q  146 tgttctttt 154  Q
    || ||||||    
T  34397956 tgctctttt 34397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 17353958 - 17354054
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||| ||||||||| ||||||  ||||||| |||||||||  || |||||||||||   ||||  ||||||||||||||||||| ||||| ||||||||    
T  17353958 ggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattg 17354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 30121784 - 30121868
Alignment:
Q  66 tagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    ||||| ||||||||||||| ||| ||| ||||||| |||   |||| |||||||| |||||||||||||||||  |||||||||||||    
T  30121784 tagtgattttcacctttggatgtatcgcatatatatgac---accttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 27788790 - 27788687
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| ||| ||||    
T  27788790 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaatataaatagaaaattg 27788694  T
Q  148 ttctttt 154  Q
     ||||||    
T  27788693 ctctttt 27788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 752
Target Start/End: Complemental strand, 33256367 - 33256327
Alignment:
Q  712 ttgcatggaaggagtgagtggaccaagtgtgggaatgagga 752  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  33256367 ttgcatggaaggagttagtggaccaagtgtgggaatgagga 33256327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 33774121 - 33774216
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    ||||||||||||||| | ||||  ||||||| |||||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| |||||||    
T  33774121 ggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacatt 33774216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 21280550 - 21280652
Alignment:
Q  49 gttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgt 148  Q
    |||||||||||||| | ||||  |||| |||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||     
T  21280550 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattgc 21280646  T
Q  149 tctttt 154  Q
    ||||||    
T  21280647 tctttt 21280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 1155897 - 1155849
Alignment:
Q  105 gacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    ||||||| |||||||||||||||||||| ||||| |||||||| |||||    
T  1155897 gacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 1155849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 19737794 - 19737691
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| | |||||  || ||||||||| |   |||| |||||||||||| ||||||| ||||| ||||||||    
T  19737794 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggc---accttgtatttatctttaaaaaaatataaatagaacattg 19737698  T
Q  148 ttctttt 154  Q
     ||||||    
T  19737697 ctctttt 19737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 20611905 - 20611969
Alignment:
Q  167 acgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||| |||  | ||||||||||||||||| ||||| |||||| ||||||| |||||    
T  20611905 acgtttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacg 20611969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 4036938 - 4037031
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaa 130  Q
    |||||||||||||| ||||||||| |||| | ||||| | || ||||||||||||  | |||||||   ||| ||||| |||||||||| |||||||    
T  4036938 ggagggtggtttgaagttcctcatatatacggtagtgatctttacctttgggtgtaccatatatat---acggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 21183683 - 21183650
Alignment:
Q  170 tttttattttattacagacctcttttcacttaca 203  Q
    ||||||||||||||| ||||||||||||||||||    
T  21183683 tttttattttattactgacctcttttcacttaca 21183650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 14318498 - 14318382
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||  ||||| ||| ||  |||||||||||   |||| |||||||||||||||||||||    
T  14318498 ggagggtggtttgaggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgac---accttgtatttatcttttaaaaaatt 14318402  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||||||||||||    
T  14318401 taaatagaacattgttcttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 2531009 - 2530826
Alignment:
Q  35 gagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattt 134  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||||| |||  ||||||||||   |||||| | ||||||||||||||||||| ||    
T  2531009 gagggtggtttgaggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatata---cgacacattgtatttatcttttaaaaaactt 2530913  T
Q  135 aaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgta 225  Q
    |||| ||||||| |||||||           ||| ||||||||||||||| | ||||||||||||||||| ||| ||||| | ||||||||    
T  2530912 aaatagaacatt-ttctttt---aagaaaaatacatttttattttattacgggcctcttttcacttacagagccaaaccttcagattcgta 2530826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 36868989 - 36868872
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||| |||||||||  |  |||||||   |||||||| ||||||||||||||||||| |    
T  36868989 ggagggtggtttgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatata---cgacaccttgtatttatcttttaaaaaaat 36868893  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  36868892 taaatagaacattgttctttt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 2024755 - 2024638
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||| ||  ||||||||| |   || | |||||||||||| ||||||||    
T  2024755 ggaggatggtttgaggatcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggc---acattgtatttatctttaaaaaaatt 2024659  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  2024658 taaatagaacattgttctttt 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 2412075 - 2412191
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||||||||||||||||||   ||||| ||||||| ||||| ||  ||| ||||||   ||||||| | |||||||| ||||||||||||    
T  2412075 ggagggtggtttgaggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatat---acgacactttgtatttattttttaaaaaatt 2412171  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||||||||||||    
T  2412172 taaatagaacattgttcttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 40794438 - 40794249
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||||||||||||| |||||||||| | ||||| ||||||||||| ||||| || ||||| |||| |    | | |||||| ||||||||||||||||    
T  40794438 agggtggtttgaggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggct---ctttgtatttgtcttttaaaaaattta 40794342  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    |||  ||||||||||||||            ||||||||||||||||||   ||||||||||||||||| ||||| |||||| ||||||| ||||    
T  40794341 aataaaacattgttcttttaaaaaaaaaa--acgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattcgtatgaac 40794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 1366639 - 1366522
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||| ||||||||||||| |||| | ||||| ||||||| ||| ||||| ||| |||||||| ||   | || ||||||||||| |||||||||    
T  1366639 ggagggtggtatgaggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccac---atcttgtatttatcttataaaaaatt 1366543  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  1366542 taaatagaacattgttctttt 1366522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 33037771 - 33037884
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||||     ||||||   |||| | || |||||||||||||||||||||||||    
T  33037771 ggtggtttgaggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatat---acgatatcttgtatttatcttttaaaaaatttaaa 33037867  T
Q  138 ttgaacattgttctttt 154  Q
    |  ||||||||||||||    
T  33037868 taaaacattgttctttt 33037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 34425890 - 34426007
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| | || || |||| | |||| ||||| ||  ||||||||| |   |||| |||||||||||||||||||||    
T  34425890 ggagggtggtttgaggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggc---accttgtatttatcttttaaaaaatt 34425986  T
Q  134 taaattgaacattgttctttt 154  Q
     |||| |||||||||||||||    
T  34425987 gaaatagaacattgttctttt 34426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 11242431 - 11242241
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||||||||||||| | ||||| ||| || |||||| ||| ||  ||||||||  |   |  | ||||||||||||||||||| |    
T  11242431 ggagggtggtttgaggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatc---attttgtatttatcttttaaaaaaat 11242335  T
Q  134 taaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||| |||||||||||||||           |||||||||||||||||||    |||||||||||||||| ||||| ||||||||||| || |||||    
T  11242334 taaatagaacattgttcttttaaaagaa----tacgtttttattttattacgagtctcttttcacttacagagccgagcctccggattcataggaacg 11242241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 41911728 - 41911614
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||| ||||||||||||||| |||| ||||||| |||| || |||||||||  ||  |||||   ||||||||| |||||| |||||||||||| |||    
T  41911728 agggtgatttgaggttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatat---acgacaccttgtatttctcttttaaaaaaatta 41911632  T
Q  136 aattgaacattgttcttt 153  Q
    | ||||||||||||||||    
T  41911631 agttgaacattgttcttt 41911614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 16198893 - 16198797
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||||||||||| ||| |||||||   ||||||||  ||||||||||||||||||| ||||| ||||||||    
T  16198893 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatata---cgacaccttatatttatcttttaaaaaatataaatagaacattg 16198797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 24395727 - 24395835
Alignment:
Q  35 gagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattt 134  Q
    ||||||||||| | ||||||||| |||| | | ||| ||||||||||||| ||| | |||||||||| ||   |||| ||||||||||||||||||||||    
T  24395727 gagggtggtttaaagttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaac---accttgtatttatcttttaaaaaattt 24395823  T
Q  135 aaattgaacatt 146  Q
    |||| |||||||    
T  24395824 aaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 26719045 - 26718871
Alignment:
Q  51 tcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttc 150  Q
    |||||||||||  | ||||| |||||||||||| |||| ||| |||||||||||   || | |||||||||||||||||| ||||||| ||||||| |||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgac---actttgtatttatcttttaaaaattttaaatagaacattattc 26718949  T
Q  151 ttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||            ||||||||||||||||||| |  ||||||||||||||||  |||| ||||||||||| || |||||    
T  26718948 ttt---aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacg 26718871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 26988789 - 26988615
Alignment:
Q  51 tcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttc 150  Q
    |||||||||||  | ||||| |||||||||||| |||| ||| |||||||||||   || | |||||||||||||||||| ||||||| ||||||| |||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgac---actttgtatttatcttttaaaaattttaaatagaacattattc 26988693  T
Q  151 ttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    |||            ||||||||||||||||||| |  ||||||||||||||||  |||| ||||||||||| || |||||    
T  26988692 ttt---aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacg 26988615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 10407514 - 10407639
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttac 202  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||           ||| ||||||||||||||  ||||||||||||||||     
T  10407514 acgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctttt---aaaaaaaatacttttttattttattatggacctcttttcacttat 10407610  T
Q  203 agtgccgaacctccggattcgtaagaacg 231  Q
    ||  |||||||||  |||||||| |||||    
T  10407611 agaaccgaacctctagattcgtaggaacg 10407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 606209 - 606258
Alignment:
Q  105 gacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  606209 gacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 10543661 - 10543776
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||| ||||| ||||||| | ||||| ||||||||||||| ||| ||| ||||||   ||  |||||  ||||||||||||||||||||    
T  10543661 ggagggtggtttgagattcct-atgtatacggtagtgattttcacctttggatgtatcgcatatat---acatcaccttatatttatcttttaaaaaatt 10543756  T
Q  134 taaattgaacattgttcttt 153  Q
    ||| | ||||||| ||||||    
T  10543757 taagtggaacattattcttt 10543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 22648845 - 22648734
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||||||||||||| || || ||||   ||||| || |||||||||| |||| |  |||||||||||   || | |||||||||||||||||||||||||    
T  22648845 ggtggtttgaggtttcttatttatacagtagtgattgtcacctttggatgtgccacatatatacgac---acattgtatttatcttttaaaaaatttaaa 22648749  T
Q  138 ttgaacattgttctt 152  Q
    | |||||||||||||    
T  22648748 tagaacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 30854330 - 30854433
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| ||||||  ||||||||| || ||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  30854330 ggttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 30854426  T
Q  148 ttctttt 154  Q
     ||||||    
T  30854427 ctctttt 30854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 34756465 - 34756362
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  34756465 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 34756369  T
Q  148 ttctttt 154  Q
     ||||||    
T  34756368 ctctttt 34756362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 38869462 - 38869359
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||| |||||||||| | ||||  |||||||||||||||||  || |||||||||||   ||||  ||||||||||||||||||| ||||| ||||||||    
T  38869462 ggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattg 38869366  T
Q  148 ttctttt 154  Q
     ||||||    
T  38869365 ctctttt 38869359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 19523200 - 19523293
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaaca 144  Q
    ||||||||||||||||| ||||  ||||||||| |||||||  || ||||||   ||| ||||| |||||||||||||||||||| ||||| |||||    
T  19523200 ggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatat---acggcaccttgtatttatcttttaaaaaatataaatagaaca 19523293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 9364292 - 9364388
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| ||||||||    
T  9364292 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatat---acggcaccttatatttatcttttaaaaaatataaatagaacattg 9364388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 27079012 - 27079115
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||||||||||   ||||  ||||||||||| |||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  27079012 ggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 27079108  T
Q  148 ttctttt 154  Q
     ||||||    
T  27079109 ctctttt 27079115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 28822441 - 28822338
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||| ||||||||| | ||||  |||||||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  28822441 ggttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 28822345  T
Q  148 ttctttt 154  Q
     ||||||    
T  28822344 ctctttt 28822338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 7338024 - 7338102
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttcttt 153  Q
    ||||||||||| |||||  || |||||||||||   |||| |||||||||||||||||||| ||||| |||||||| |||||    
T  7338024 ttttcacctttaggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatataaatagaacattgctcttt 7338102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 15639635 - 15639749
Alignment:
Q  39 gtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt---ta 135  Q
    ||||||| |||||||| ||||||| || |||| |||||| |||||| ||| ||| ||||||||| |   |||| |||||||||||| ||||||     ||    
T  15639635 gtggtttaaggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtc---accttgtatttatctttaaaaaaaaaaaata 15639731  T
Q  136 aattgaacattgttcttt 153  Q
    ||||||||||||||||||    
T  15639732 aattgaacattgttcttt 15639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 27530546 - 27530587
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  27530546 gtattaatcttttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 16592173 - 16592070
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||||| |||| | ||||  ||||||||| |||||||  || |||||||||||   |||  |||||||||||||| ||||| ||||| ||||||||    
T  16592173 ggttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgac---accctgtatttatcttttagaaaatataaatagaacattg 16592077  T
Q  148 ttctttt 154  Q
     ||||||    
T  16592076 ctctttt 16592070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 23284161 - 23284058
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||| ||||||||||  || |||||||   |||||||| |||||||   |||||||||| ||||| ||||||||    
T  23284161 ggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatata---cgacaccttgtatttagtctttaaaaaatataaatagaacattg 23284065  T
Q  148 ttctttt 154  Q
     ||||||    
T  23284064 ctctttt 23284058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 35080806 - 35080766
Alignment:
Q  114 tatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  35080806 tatttatcttttaaaaaatttaaataaaacattgttctttt 35080766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 15480188 - 15480094
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    ||||||||||| ||| | ||||  ||||||||| |||||||  || |||||||||||   | || |||||||||||||||||||| ||||| ||||||    
T  15480188 ggttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgac---atcttgtatttatcttttaaaaaatataaatagaacat 15480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 31194655 - 31194608
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  31194655 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 31194608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 36187980 - 36187875
Alignment:
Q  46 gaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    |||||| |||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||| ||||||||||| ||||| ||||||    
T  36187980 gaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatattttaaaaaatataaatagaacat 36187884  T
Q  146 tgttctttt 154  Q
     | ||||||    
T  36187883 cgctctttt 36187875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 31881471 - 31881430
Alignment:
Q  113 gtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  31881471 gtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 35080755 - 35080694
Alignment:
Q  170 tttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||||||||||||||| | ||||||||||||||||| | ||| ||||  |||||||| |||||    
T  35080755 tttttattttattacggccctcttttcacttacagagtcgagcctctagattcgtaggaacg 35080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 40389611 - 40389539
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||| |||  || |||||||||||   ||||  ||||||||||||||||||| ||||| ||||||||    
T  40389611 ttttcacctttggatgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattg 40389539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 38914 - 39106
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    |||||||||||||||||||||| |||| | ||||| ||||||| |||| |||| ||| |||||||||||   |||| |||||||||||||||||||||||    
T  38914 agggtggtttgaggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgac---accttgtatttatcttttaaaaaattta 39010  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
    ||| |||||||||| ||              |||||||||||||||||| |||||||||| ||||||||   ||| ||||| |||||||| |||||    
T  39011 aatagaacattgtttttaaaaaaaaaaaaaaacgtttttattttattacggacctctttttacttacagaatcgagcctccagattcgtaggaacg 39106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 206597 - 206417
Alignment:
Q  42 gtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattga 141  Q
    ||||||||||||||||||||| | ||||| |||||||| ||||||||  || |||||||||||   |||| |||||||||||||| ||||||||||| ||    
T  206597 gtttgaggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgac---accttgtatttatcttttacaaaatttaaataga 206501  T
Q  142 acattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaac 230  Q
    ||||| ||||||            ||| |||||||||||||||| |||||||||||||||||| ||||  |||| ||||||||| ||||    
T  206500 acattcttcttt---aaaaaaaaatacatttttattttattacaaacctcttttcacttacagagccg--cctcaggattcgtaggaac 206417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 1346 - 1532
Alignment:
Q  39 gtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaat 138  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| | | ||||||   ||  |||||  ||||||||||||||||| |||||||    
T  1346 gtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatat---acagcaccttatatttatcttttaaaaattttaaat 1442  T
Q  139 tgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattcgtaagaacg 231  Q
     ||||||| |||||||           ||||||||||||||||||| ||| ||||||||||||||| || || ||| | |||||||| |||||    
T  1443 agaacattattctttt---aaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacg 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 26279530 - 26279649
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtata-tga-tagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaa 131  Q
    ||||||||||||||||||||||||||||| ||  ||||| |||||| |||||||||| | | |||||||||||   ||||  ||||||||||||||||||    
T  26279530 ggagggtggtttgaggttcctcatgtataatgtgtagtgattttcatctttgggtgtattgcatatatacgac---accttctatttatcttttaaaaaa 26279626  T
Q  132 tttaaattgaacattgttctttt 154  Q
    ||||||| |||||||||||||||    
T  26279627 tttaaatagaacattgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 42453403 - 42453511
Alignment:
Q  36 agggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaattta 135  Q
    ||||||||||||||||||||||||||| | ||       |||||||| ||||| ||| ||||||| |||   |||| |||||||||||||||||||||||    
T  42453403 agggtggtttgaggttcctcatgtatacgcta-------tcacctttaggtgtatcgcatatatatgac---accttgtatttatcttttaaaaaattta 42453492  T
Q  136 aattgaacattgttctttt 154  Q
    |||||||||||||||||||    
T  42453493 aattgaacattgttctttt 42453511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 54574943 - 54574826
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||| |||||||||||||||||||||||| ||||| |||| || |||||||||  || |||||||||     |||| |||||||| |||| |||||||    
T  54574943 ggagggcggtttgaggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggt---accttgtatttatattttgaaaaatt 54574847  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  54574846 taaatagaacattgttctttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 32319263 - 32319109
Alignment:
Q  42 gtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattga 141  Q
    |||||||||||||| | |||| ||||||  |||||||||||||||||  || |||||||| ||   || | |||||||||||||||||||||||||| ||    
T  32319263 gtttgaggttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaac---actttgtatttatcttttaaaaaatttaaataga 32319167  T
Q  142 acattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacag 204  Q
    ||||| ||||||            ||| ||||||||||||||||||||| |||||||||||||    
T  32319166 acattattcttt-----aaaaacttacatttttattttattacagacctattttcacttacag 32319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 789930 - 790042
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    ||||||||||||||||||||||||||| | ||| |||| ||||||||||||     ||||||   | ||||||| ||||||||  |||||||||||||||    
T  789930 ggtggtttgaggttcctcatgtatatggtggtgatttttacctttgggtgtacaacatatat---atgacaccttgtatttattgtttaaaaaatttaaa 790026  T
Q  138 ttgaacattgttcttt 153  Q
    | ||| ||||||||||    
T  790027 tagaagattgttcttt 790042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 25855412 - 25855527
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||||||| || |||||| | ||||| |||||| |||||||||      |||||||||||   |||| ||||| |||||||||||||||    
T  25855412 ggagggtggtttgaggttcttcgtgtatacggtagtgattttcaactttgggtgcactacatatatacgac---accttgtatt-atcttttaaaaaatt 25855507  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||||||||||||||    
T  25855508 taaatagaacattgttcttt 25855527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 8073440 - 8073345
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    ||||||||||||||| | ||||  ||||||| |||||||||  || |||||||||||   |||| |||||||||||||||||||| ||||| |||||||    
T  8073440 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatataaatagaacatt 8073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 21582775 - 21582878
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| |||||  |||||||    
T  21582775 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaataaaacattg 21582871  T
Q  148 ttctttt 154  Q
    |||||||    
T  21582872 ttctttt 21582878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 54619305 - 54619202
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| ||||||||    
T  54619305 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattg 54619209  T
Q  148 ttctttt 154  Q
     ||||||    
T  54619208 ctctttt 54619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 47467688 - 47467782
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacat 145  Q
    ||||||||||||||| | ||||  ||||||||| ||||||| ||| ||||||   ||| ||||| |||||||||||||||||||| ||||| ||||||    
T  47467688 ggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatat---acggcaccttgtatttatcttttaaaaaatataaatagaacat 47467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 8420320 - 8420433
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||||||||||||||||| | |||| |  |||| ||||||| |||||||||     ||||||||| |   |||| |||||||||||||||||||||||||    
T  8420320 ggtggtttgaggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggc---accttgtatttatcttttaaaaaatttaaa 8420416  T
Q  138 ttgaacattgttctttt 154  Q
    | ||||||| |||||||    
T  8420417 tagaacattattctttt 8420433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 49393085 - 49393195
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||| |||||||||| ||||||||| | ||||  |||| ||||||||||||  |  ||||||||||||   ||| |||||||||||||||||||||||||    
T  49393085 ggtgatttgaggttc-tcatgtatacggtagtaatttttacctttgggtgta-cacatatatacgacg---ccttgtatttatcttttaaaaaatttaaa 49393179  T
Q  138 ttgaacattgttcttt 153  Q
      ||||||||||||||    
T  49393180 gagaacattgttcttt 49393195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 3953974 - 3953895
Alignment:
Q  72 ttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| |||||||||||||||    
T  3953974 ttttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattgttctttt 3953895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 34290738 - 34290635
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    |||||||||| |||| | ||||  |||||||||||||||||  || ||||||||| |   ||||  ||||||||||||||||||| ||||| ||||||||    
T  34290738 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggc---accttatatttatcttttaaaaaatataaatagaacattg 34290642  T
Q  148 ttctttt 154  Q
    || ||||    
T  34290641 ttttttt 34290635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 44708481 - 44708576
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacatt 146  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || ||||||   ||| |||||  ||||||||||||||||||| ||||| |||||||    
T  44708481 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatat---acggcaccttatatttatcttttaaaaaatataaatagaacatt 44708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 18372539 - 18372590
Alignment:
Q  103 acgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  18372539 acgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 18372590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 28689477 - 28689368
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||| ||||||| || |||||||||| |  |||| ||||||||||||| | | ||| ||||||   ||| ||||| |||||||||||||  ||||||    
T  28689477 ggagggtagtttgagatttctcatgtatacggcagtgattttcacctttggatatatcgcatatat---acggcaccttgtatttatctttttgaaaatt 28689381  T
Q  134 taaattgaacatt 146  Q
    ||||| |||||||    
T  28689380 taaatagaacatt 28689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 36716104 - 36716024
Alignment:
Q  71 gttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    |||||||||| |||||||  || ||||||||| |   |||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  36716104 gttttcacctctgggtgtaccgcatatatacggc---accttgtatttatcttttaaaaaatataaatagaacattgctctttt 36716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 38681139 - 38681092
Alignment:
Q  107 cacctcgtatttatcttttaaaaaatttaaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  38681139 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 38681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 52374650 - 52374763
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaa 137  Q
    |||||| |||||||| ||||||||| | ||||| ||||| ||||| | ||| ||| || ||||||||   || | |||||||| |   ||||||||||||    
T  52374650 ggtggtatgaggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgac---acattgtatttatttaaaaaaaaatttaaa 52374746  T
Q  138 ttgaacattgttctttt 154  Q
    | |||||||||||||||    
T  52374747 tagaacattgttctttt 52374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 50939335 - 50939239
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||| ||||||||||||  | |||||||   ||| |||||  ||||||||||||||||||| ||||| || |||||    
T  50939335 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatat---acggcaccttatatttatcttttaaaaaatataaatagatcattg 50939239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 230975 - 230858
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    |||||||||||||| |||||||||||||| | ||||| ||||||||||||||| | ||| |||||||| ||   ||||   ||||||||||||| |||||    
T  230975 ggagggtggtttgaagttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaac---accttaaatttatcttttaacaaatt 230879  T
Q  134 taaattgaacattgttctttt 154  Q
    ||||| |||||||||||||||    
T  230878 taaatagaacattgttctttt 230858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 173626 - 173515
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||| ||||||||||||||||| ||||| | ||||| |||| |||||||||||| ||| |||||||||     |||| |||||||||||||||||||||    
T  173626 ggaggatggtttgaggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggt---accttgtatttatcttttaaaaaatt 173530  T
Q  134 taaattgaacattgt 148  Q
    ||||| |||||||||    
T  173529 taaatagaacattgt 173515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 24109 - 23993
Alignment:
Q  34 ggagggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatt 133  Q
    ||||||||||||||| ||||| ||| ||| | || || ||||||| |||||||||  || |||||||||||   |||| |||||||||||||||||||||    
T  24109 ggagggtggtttgagattccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgac---accttgtatttatcttttaaaaaatt 24013  T
Q  134 taaattgaacattgttcttt 153  Q
    ||||| ||| ||||||||||    
T  24012 taaatagaatattgttcttt 23993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 106539 - 106642
Alignment:
Q  48 ggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaatttaaattgaacattg 147  Q
    ||||||||||||||| | ||||  |||||||||||||||||  || |||||||||||   ||||  ||||||||||||||||||| ||||| ||||||||    
T  106539 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgac---accttatatttatcttttaaaaaatataaatagaacattg 106635  T
Q  148 ttctttt 154  Q
    |||||||    
T  106636 ttctttt 106642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 40076 - 40257
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaat--tta 135  Q
    |||||||||||||| |||||||||| ||| ||| |||||||||| ||||||     ||| ||||| |   |||| |||||||||||||||||||   |||    
T  40076 ggtggtttgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggc---accttgtatttatcttttaaaaaaaaatta 40172  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattc 222  Q
    ||| |||||||||||||||           ||| |||||||||||||||  |||||||||||||||||| || |||||||| |||||    
T  40173 aatagaacattgttctttttaaaaaaaa--tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattc 40257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 138136 - 138317
Alignment:
Q  38 ggtggtttgaggttcctcatgtatatgatagtggttttcacctttgggtgtgtcgtatatatacgacgacacctcgtatttatcttttaaaaaat--tta 135  Q
    |||||||||||||| |||||||||| ||| ||| |||||||||| ||||||     ||| ||||| |   |||| |||||||||||||||||||   |||    
T  138136 ggtggtttgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggc---accttgtatttatcttttaaaaaaaaatta 138232  T
Q  136 aattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgccgaacctccggattc 222  Q
    ||| |||||||||||||||           ||| |||||||||||||||  |||||||||||||||||| || |||||||| |||||    
T  138233 aatagaacattgttctttttaaaaaaaa--tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattc 138317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 752
Target Start/End: Complemental strand, 485 - 445
Alignment:
Q  712 ttgcatggaaggagtgagtggaccaagtgtgggaatgagga 752  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  485 ttgcatggaaggagttagtggaccaagtgtgggaatgagga 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 16123 - 16232
Alignment:
Q  108 acctcgtatttatcttttaaaaaatttaaattgaacattgttcttttnnnnnnnnnnntacgtttttattttattacagacctcttttcacttacagtgc 207  Q
    |||| |||||||||||||||||||||||||| |||||||  |||||            ||||||||||||||||||||||  | ||||||||||||| |     
T  16123 accttgtatttatcttttaaaaaatttaaatagaacatttctcttt---aaaaagaaatacgtttttattttattacagaatttttttcacttacagagt 16219  T
Q  208 cgaacctccggat 220  Q
    ||| |||||||||    
T  16220 cgagcctccggat 16232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University