View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10020_high_1 (Length: 571)

Name: NF10020_high_1
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10020_high_1
NF10020_high_1
[»] chr2 (1 HSPs)
chr2 (18-566)||(2017154-2017707)
[»] chr3 (8 HSPs)
chr3 (200-426)||(40577234-40577448)
chr3 (200-304)||(40570921-40571025)
chr3 (22-271)||(40566267-40566516)
chr3 (330-426)||(40566118-40566214)
chr3 (338-416)||(40570821-40570899)
chr3 (200-273)||(40595654-40595727)
chr3 (22-126)||(40589388-40589492)
chr3 (209-261)||(40600307-40600359)
[»] chr5 (2 HSPs)
chr5 (95-304)||(8490588-8490797)
chr5 (338-426)||(8490478-8490566)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 2017154 - 2017707
Alignment:
Q  18 taaacctgttgcacaaagccaaacatcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaa 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2017154 taaacctgttgcacaaagccaaacatcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaacaaa 2017253  T
Q  118 cttgtttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctact 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017254 cttgtttcgtgttgatgagacgggaaaatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctact 2017353  T
Q  218 ggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttgaggttnnnnnnnnnnnnn 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||                 
T  2017354 ggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtatatgggttgaggttgaagaagaagaag 2017453  T
Q  318 nnnntgcttaggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgt 417  Q
        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2017454 aagatgctttggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtgacagagccacactttgttgt 2017553  T
Q  418 gcagtttgggagagatagttgctgagttgttgcttttgcaaaaaagaccgcaaaaactaccagctgcagcaactgatttgaggccacagccatgtgcatg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017554 gcagtttgggagagatagttgctgagttgttgcttttgcaaaaaagaccgcaaaaactaccagctgcagcaactgatttgaggccacagccatgtgcatg 2017653  T
Q  518 attttgctaatttttcaggttcatc-----ttataacttttacaaatcattgga 566  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  2017654 attttgctaatttttcaggttcatcgttcgttataacttttacaaatcattgga 2017707  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 200 - 426
Target Start/End: Complemental strand, 40577448 - 40577234
Alignment:
Q  200 tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg 299  Q
    ||||||| |||||||||||||||||||||  | |||||||||| ||| ||||||||||| ||| |||||||||| ||||||| ||| ||||  | |||||    
T  40577448 tagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacctctgttg 40577349  T
Q  300 aggttnnnnnnnnnnnnnnnnntgcttaggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggc 399  Q
    |||||                 || || | ||||||  |||||||| |||||||| |  |||||||||||||||||||||||||| |||||||| ||| |    
T  40577348 aggtt------------gaagatgttttgttgcaatcgatgagaaaggtgttgtctagagaacaatccttggtggttccaaatgggaagggaatagtgac 40577261  T
Q  400 agagccacactttgttgtgcagtttgg 426  Q
    |  ||||||||||||||  ||||||||    
T  40577260 attgccacactttgttggacagtttgg 40577234  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 40571025 - 40570921
Alignment:
Q  200 tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg 299  Q
    |||||||| || ||||||||||||||| ||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| ||||  | |||||    
T  40571025 tagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttg 40570926  T
Q  300 aggtt 304  Q
    |||||    
T  40570925 aggtt 40570921  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 40566516 - 40566267
Alignment:
Q  22 cctgttgcacaaagccaaacatcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttg 121  Q
    ||||||||| ||||||| |||||| || |||||||||||||||||| ||||||  || | ||||  | ||||||||||||||||||| ||    ||||||    
T  40566516 cctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttg 40566417  T
Q  122 tttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggcc 221  Q
    ||||| ||||  |||| |  || |||||||||  | ||| |||  |  | |||||  |    | ||| ||||||  ||||||||||||||||||||||||    
T  40566416 tttcgagttggcgagatgtaaaaatgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggcc 40566317  T
Q  222 atgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgatta 271  Q
    |||||||  ||| ||||||||  || ||||| ||||||||| ||||||||    
T  40566316 atgcaacgtgcaattcaccattgagtgagatatttaggacattttgatta 40566267  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 40566214 - 40566118
Alignment:
Q  330 tgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgtgcagtttgg 426  Q
    ||||||| |||||||| || ||||| | |||||||| ||| ||||||||||||||||||||||| ||| | || ||||| ||||||| ||| |||||    
T  40566214 tgcaattaatgagaaaggtattgtcgagggaacaattcttagtggttccaaatggaaagggaatggtgacggaaccacattttgttgggcaatttgg 40566118  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 40570899 - 40570821
Alignment:
Q  338 atgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttg 416  Q
    |||||||| |||||||| |  |||||||  ||||||||||||||||| |||||||| ||| ||  ||||||||||||||    
T  40570899 atgagaaaggtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttg 40570821  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 40595727 - 40595654
Alignment:
Q  200 tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagt 273  Q
    |||||||  ||||||||||||||||||||| |||||||||||| ||| || || |||| ||||  |||||||||    
T  40595727 tagcaatgtctggctactggccatgcaacatgcagttcaccattaagtgatatatttaagacacgttgattagt 40595654  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 40589492 - 40589388
Alignment:
Q  22 cctgttgcacaaagccaaacatcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttg 121  Q
    |||||||||| ||||||||||||| |  ||||||||||||||  || |||||| | || |||||||| ||   || ||||||||||| || |  ||||||    
T  40589492 cctgttgcaccaagccaaacatccagaggtgtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaacttg 40589393  T
Q  122 tttcg 126  Q
    |||||    
T  40589392 tttcg 40589388  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 40600359 - 40600307
Alignment:
Q  209 ctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggac 261  Q
    ||||||||||||||||| ||||||| ||||||||  || ||||| ||||||||    
T  40600359 ctggctactggccatgcgacacgcaattcaccattgagtgagatatttaggac 40600307  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 95 - 304
Target Start/End: Complemental strand, 8490797 - 8490588
Alignment:
Q  95 gtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctctttt 194  Q
    |||||||| ||||| || |  ||||||||||  |||| |||||   |||||||||||||  |||| ||   | ||| |||||||||| || | | |||||    
T  8490797 gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt 8490698  T
Q  195 cgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatg 294  Q
    |  | |||||||| ||| ||| ||||||||||||| ||||||||||||| || ||||||||||| ||| |||||||| | ||||||| ||| ||||  |     
T  8490697 cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc 8490598  T
Q  295 tgttgaggtt 304  Q
    ||||||||||    
T  8490597 tgttgaggtt 8490588  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 8490566 - 8490478
Alignment:
Q  338 atgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtggcagagccacactttgttgtgcagtttgg 426  Q
    |||||||| |||||||| |  ||||||  |||||||||||||||||| |||||||| ||| ||||||||||||||||||  ||||||||    
T  8490566 atgagaaaggtgttgtctagagaacaactcttggtggttccaaatgggaagggaatagtgacagagccacactttgttggacagtttgg 8490478  T

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