View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_high_2 (Length: 440)
Name: NF10020_high_2
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 20460032 - 20459613
Alignment:
| Q |
18 |
gattatacataacttaagatttccagaatcagatggaccgtgtcaaacttaacattctcattcatagattggctctaaatagattgaatgagaaaaggta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
20460032 |
gattatacataacttaagatttccagaatcagatggacggtgtcaaacttaacattctcattcatagattggcactaaatagattgaatgagaaaaagta |
20459933 |
T |
|
| Q |
118 |
gaactaactaggttccttgatgcacactcggatccaacacaggaaaattatacaacaaccacttaacaatggaaggaaaatatgtggattatttttctga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20459932 |
gaactaactaggttccttgatgcacactcggatccaacacaggaaaattatacaacaaccacttaacaatggaaggaaaatatgtggattatttttctga |
20459833 |
T |
|
| Q |
218 |
aatgatgaaattacagtagaacgaaaagaatgctcaaaagcataatccagttcatcctgagcttcataaaaattcaagaagttcacaacgtcg-aaacaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
20459832 |
aatgatgaaattacagtagaacgaaaagaatgctcaaaagcataatccagttcatcctgagcttcataaaaattcaagaagttcacagcgtcgaaaacaa |
20459733 |
T |
|
| Q |
317 |
aaatcatggaaaaagaaagtatatataaaacaatgttaagataccacctcaataaaccctcttccagtcatatttggtatatgacaagagaagctgagag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20459732 |
aaatcatggaaaaagaaagtatatataaaacaatgttaagataccacctcaataaaccctcttccagtcatatttggtatatgacaagagaagctgagag |
20459633 |
T |
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| Q |
417 |
tttgaagctcatgatgtcca |
436 |
Q |
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|||||||||||||||||||| |
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| T |
20459632 |
tttgaagctcatgatgtcca |
20459613 |
T |
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