View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_high_5 (Length: 259)
Name: NF10020_high_5
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13160769 - 13160529
Alignment:
| Q |
1 |
tatatcgcgcgggttaccaacatggctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtat |
100 |
Q |
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| T |
13160769 |
tatatcgcgcgggttaccaacatggctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtat |
13160670 |
T |
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| Q |
101 |
gacctaacatcatttctaaaagaacctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagac |
200 |
Q |
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| T |
13160669 |
gacctaacatcatttctaaaagaacctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagac |
13160570 |
T |
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| Q |
201 |
cttgagctcttatcgcttgatatatattttgggtggcaggt |
241 |
Q |
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| T |
13160569 |
cttgagctcttatcgcttgatatatattttgggtggcaggt |
13160529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 13152493 - 13152700
Alignment:
| Q |
25 |
gctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtatgacctaacatcatttctaaaagaa |
124 |
Q |
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| T |
13152493 |
gctaaaataagagtaaatatttgcaaataaaggtgcatttgcatatactaagtagcctataattggatccaaatatgacctcacatcgcttctaaatgaa |
13152592 |
T |
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| Q |
125 |
cctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagaccttgagctcttatcgcttgatata |
224 |
Q |
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| T |
13152593 |
cctttagacggcgggtacgaagttcctatcatggtcatgtcaatagccgttgaaaccttgatttgatcgtgcagatttttcgctcttattgcttgatata |
13152692 |
T |
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| Q |
225 |
tattttgg |
232 |
Q |
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| T |
13152693 |
tgttttgg |
13152700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 13145729 - 13145936
Alignment:
| Q |
25 |
gctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtatgacctaacatcatttctaaaagaa |
124 |
Q |
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| T |
13145729 |
gctaaaataagagtaaatatttgcaaataaaggtgcatttgcatatactaagtagcctataattggatccaaatatgacctcacatcgcttctaaatgaa |
13145828 |
T |
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| Q |
125 |
cctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagaccttgagctcttatcgcttgatata |
224 |
Q |
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| T |
13145829 |
cctttagacggcgggtacgaagttcctatcatggtcatgtcaatagccgttgaaaccttgatttgatcttgaaaatttttcgctcttattgcttggtata |
13145928 |
T |
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| Q |
225 |
tattttgg |
232 |
Q |
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| T |
13145929 |
tgttttgg |
13145936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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