View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_high_6 (Length: 243)
Name: NF10020_high_6
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41358939 - 41359151
Alignment:
| Q |
1 |
ggtgttaaatgacattgatccagagttgttccaattactaacaatctccatccttgcatgcagtggctgtaaacccagtggccacccctcattctaacat |
100 |
Q |
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| T |
41358939 |
ggtgttaaatgacattgatccagagttgttcccattactaacaatctccatccttgcatgcagtggctgtaaacccagtggccacccctcattctaacat |
41359038 |
T |
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| Q |
101 |
caaatccattgtat--nnnnnnnnncatgaatacaatgaaaattcatgaggaaaattccaaaaactaacatatgaatataatagtcaaaagagtacctgt |
198 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41359039 |
caaatccattgtataaaaaaaaaaacatgaatacaat-------------gaaaattccaaaaactaatatatgaatataatagtcaaaagagtacctgt |
41359125 |
T |
|
| Q |
199 |
tgagccatgttcttctctgtgatctt |
224 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
41359126 |
tgagccatgttcttctctgtgatctt |
41359151 |
T |
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