View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10020_low_1 (Length: 715)

Name: NF10020_low_1
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10020_low_1
NF10020_low_1
[»] chr1 (6 HSPs)
chr1 (36-703)||(9804675-9805341)
chr1 (212-644)||(9817777-9818211)
chr1 (363-703)||(9806455-9806792)
chr1 (8-151)||(9817550-9817693)
chr1 (15-154)||(9817438-9817577)
chr1 (36-144)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (215-706)||(11788-12285)
scaffold0432 (8-158)||(11558-11708)
scaffold0432 (36-154)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (212-366)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (587-678)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 36 - 703
Target Start/End: Original strand, 9804675 - 9805341
Alignment:
Q  36 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 135  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9804675 tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga 9804774  T
Q  136 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804775 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 9804874  T
Q  236 tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatcttgatcattttgcatgtctttctcta 335  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| |||||||||||||||||||||| |    
T  9804875 tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgtctttctcaa 9804973  T
Q  336 atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9804974 atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttcttata 9805073  T
Q  436 ctcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcat 535  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9805074 ctcttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcat 9805173  T
Q  536 ttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcaca 635  Q
    |  | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9805174 tcctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcaca 9805273  T
Q  636 atataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtc 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9805274 atataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgttcaatgatgtc 9805341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 212 - 644
Target Start/End: Original strand, 9817777 - 9818211
Alignment:
Q  212 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt 311  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||        ||||     
T  9817777 tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacat--ttttttatcta 9817874  T
Q  312 gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaattta 411  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9817875 gatcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaattta 9817974  T
Q  412 ttatccacagatggatttcttat--actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaac 509  Q
    ||||| ||| ||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9817975 ttatctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgcttttcattttgttcaac 9818074  T
Q  510 aagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatatttt 609  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
T  9818075 aagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaatacaagtacataattt 9818174  T
Q  610 aataaccgaataaaacaa--aaatcacaatatacctt 644  Q
    |||||||| |||||| ||  |||||||||||||||||    
T  9818175 aataaccgtataaaaaaaataaatcacaatatacctt 9818211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 363 - 703
Target Start/End: Complemental strand, 9806792 - 9806455
Alignment:
Q  363 tttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttactt 459  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    | | ||| | |||||||   ||||||||||||||||| |||||||    
T  9806792 tttcaaacatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccaccttactt 9806693  T
Q  460 ttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaattta 554  Q
    | ||| || ||||||||| ||| ||  | |||     || ||||||||||||||||| |||||||||||||||            ||||||||||||| |    
T  9806692 tcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt------------gtgtacaaaaattaa 9806606  T
Q  555 agataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaatataccttgattctcc 652  Q
    | |||||||||||| |||||  |||||| |||||||||| |||||||||||||| ||||||| | ||||| |||  ||||||||||||||||||||||||    
T  9806605 atataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaatataccttgattctcc 9806506  T
Q  653 cttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtc 703  Q
    ||||||| ||| || |||||||||||||||||| || ||||||||||||||    
T  9806505 cttttcgtgagcacgtgaaataccttccatcttgtcttgttcaatgatgtc 9806455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
Q  8 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 107  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||| |||||    
T  9817550 tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc 9817649  T
Q  108 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa 151  Q
    ||||||||| || |||  ||||||||||||||||||||||||||    
T  9817650 tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa 9817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
Q  15 gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc 114  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||  ||| | |||||||||||||||    
T  9817438 gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc 9817537  T
Q  115 tagcaccatcactgagatcgacatcgatcagaaaaaagaa 154  Q
    || ||||||   ||||||||||||| |||| | |||||||    
T  9817538 taccaccataggtgagatcgacatcaatcaaacaaaagaa 9817577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
Q  36 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 135  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||  ||||| |||||||||||||| || ||||||| ||| ||||||    
T  9817341 tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga 9817439  T
Q  136 catcgatca 144  Q
    |||||||||    
T  9817440 catcgatca 9817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 215 - 706
Target Start/End: Original strand, 11788 - 12285
Alignment:
Q  215 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaactttttt-catatannnnnnnatcttga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||| || ||        ||||  |    
T  11788 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacat--tgttttatctata 11885  T
Q  314 tcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttatt 413  Q
    | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  11886 taattttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttatt 11985  T
Q  414 atccacagatggatttctta---tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgtt 505  Q
    ||  ||| || |||||||||   |||||||||||||||||||||||| ||| |||||||||||||||  | |||||| |||     ||||||||||||||    
T  11986 atgtacacatagatttcttattctactcttcaaattccccatcttac-tttagggaagagtcttcctcgttatcactagtggcatccttttcattttgtt 12084  T
Q  506 caacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacata 605  Q
    ||||||||||||||| |||||| | ||||||   |||||| ||||||||| |||||||| ||||||||||||||||  |||||||||| | |||||||||    
T  12085 caacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataacaaacataagtacata 12183  T
Q  606 ttttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtcc 704  Q
     || ||||||| | ||||| || ||||||||| |||| ||||||| ||||||||  ||||||||| ||||||||||||||| || || ||||||||||||    
T  12184 attgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatcttgtcatgatcaatgatgtcc 12283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 11558 - 11708
Alignment:
Q  8 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 107  Q
    |||||| |||||  ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || |||||   ||| | ||||||    
T  11558 tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc 11657  T
Q  108 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat 158  Q
    |||||| || ||||||| |||||||| ||||||||  ||||||||||||||    
T  11658 tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 11467 - 11585
Alignment:
Q  36 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 135  Q
    ||||||||||||||||||| |||||| ||||| || | ||| | |||||||||||   || || ||||||||||||| ||| ||| | | ||||||||||    
T  11467 tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga 11566  T
Q  136 catcgatcagaaaaaagaa 154  Q
    ||| ||||| | |||||||    
T  11567 cattgatcaaacaaaagaa 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 212 - 366
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
Q  212 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt 311  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| ||        ||||     
T  42778900 tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacat--ttctttatcta 42778804  T
Q  312 gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttc 366  Q
    |||||||||||| | |||||| | ||||||||||| ||||||| |||||||||||    
T  42778803 gatcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc 42778749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 678
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
Q  587 taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt 678  Q
    ||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  2371052 taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt 2371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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