View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_low_11 (Length: 205)
Name: NF10020_low_11
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_low_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 34451206 - 34451017
Alignment:
| Q |
16 |
ggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcatttt |
115 |
Q |
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| T |
34451206 |
ggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcatttt |
34451107 |
T |
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| Q |
116 |
gaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcacttc |
205 |
Q |
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| T |
34451106 |
gaacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcacttc |
34451017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 34475745 - 34475557
Alignment:
| Q |
17 |
gaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcattttg |
116 |
Q |
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| T |
34475745 |
gaggatgttaggaagatttttcaatcttcaagcagtaatatctcacagcagctaaacttcattgattcattgcaacgtttgggaatatcttatcattttg |
34475646 |
T |
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| Q |
117 |
aacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcacttc |
205 |
Q |
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| T |
34475645 |
aacttgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaataaccacagaagaaggttcccttcacttc |
34475557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 34487995 - 34487810
Alignment:
| Q |
20 |
gaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcattttgaac |
119 |
Q |
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| T |
34487995 |
gaagtgaagaagatgtttctattttcaaggaatgatagtgaacaaaaccttaacttcattgactcattgcaacgtttgggaatatcttatcattttgaac |
34487896 |
T |
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| Q |
120 |
gtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcacttc |
205 |
Q |
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| T |
34487895 |
gtgaaattgatgaagcattggaacaaatccacaatacttttaccaacaataaggaaataaccacaaaagaaggctcccttcacttc |
34487810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 34461977 - 34461790
Alignment:
| Q |
17 |
gaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcattttg |
116 |
Q |
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| T |
34461977 |
gaggaagtgaagaaacttttactatcttcaaggaatgatatggcacaaatactaaacctcattgactcattgcaacgtttgggaatatcttatcaatttg |
34461878 |
T |
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| Q |
117 |
aacgtgaaattgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcactt |
204 |
Q |
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| T |
34461877 |
aacatgaaattgatgaagcgttagaacaaattcacaacaattttagtgacaataaggaaatgacctcagaagaaggtgaccttcactt |
34461790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 1595361 - 1595245
Alignment:
| Q |
17 |
gaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcattttg |
116 |
Q |
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| T |
1595361 |
gaggaagtgaggaagatttttcaatcttcaagcaatagtatctcacaaaaactaaacatcattgactcattgcaacgtttgggaatatcttatcattttg |
1595262 |
T |
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| Q |
117 |
aacgtgaaattgatgaa |
133 |
Q |
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| T |
1595261 |
aacgtgaaattgatgaa |
1595245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 6128614 - 6128790
Alignment:
| Q |
28 |
gaagatttttcaatctt-caagcaatgatatttcacaaaagttaaacttcattgactcattgcaacgtttgggaatatcttatcattttgaacgtgaaat |
126 |
Q |
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| T |
6128614 |
gaagatttttctatcttgcaag-aatgatgtttcccaacaactaaacttgattgactcattgcatcgtttgggaatatcttatcattttgaaagtgaaat |
6128712 |
T |
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| Q |
127 |
tgatgaagcattagagcaaatccacaagaatttaactaagaataaggaaataaccacaaaagaaggttcccttcactt |
204 |
Q |
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| T |
6128713 |
tgatgaagcattaaaacaaatctacacaaaatttactaacaataaggaaataaccactaatgaaggtggccttcactt |
6128790 |
T |
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