View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_low_3 (Length: 498)
Name: NF10020_low_3
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 935149 - 935634
Alignment:
| Q |
1 |
gtattgacttgttcgatttgatggtcaatttattttctgtattggaagtcatttagattgttatttttcgaggaaagttttgagtaaatagttatataag |
100 |
Q |
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| T |
935149 |
gtattgacttgttcgatttgatggtcaatttattttctgtattggaagtcatttagattgttatttttcgaggaaagttttgagtaaatagttatataag |
935248 |
T |
|
| Q |
101 |
gcctataaatatattaaattggttttataagtcattaaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtcacgttagtctaagg |
200 |
Q |
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| T |
935249 |
gcctataaatatattaaattcgttttataagtcattaaaaggagaaaaagaaagctcttagaacatggaagtttaactttgttgtcacgttagtctaagg |
935348 |
T |
|
| Q |
201 |
tgtaaaattgttatattcgtttgtaaagtttaatatttgtttaataactcaaagctgacaagtatttgcattggaaatgacatgaaatatcaaaattaat |
300 |
Q |
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| T |
935349 |
tgtaaaattgttatattcgtttgtaaagtttaatatttgtttaataactcaaagctcacaagtatttgcattggaaatgacatgaaacatcaaaattaat |
935448 |
T |
|
| Q |
301 |
attgcacaatcacaagcaattagagattagtcatgctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctt |
400 |
Q |
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| T |
935449 |
attgcacaatcacaagcaattagagattagtcatgctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctt |
935548 |
T |
|
| Q |
401 |
tacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgagtcacaggtt |
486 |
Q |
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| T |
935549 |
tacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgaggcacaggtt |
935634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 282 - 483
Target Start/End: Original strand, 937201 - 937406
Alignment:
| Q |
282 |
atgaaatatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattac---atga-gagtgaaaattaaacaggattcaatttcttg |
377 |
Q |
| |
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|||||| |||||| | || |||||||||| |||||||||| ||||||||||||| |||||| || | ||| |||||||||| ||||||||||||||| |
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| T |
937201 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattactacatcaagagagaaaattaaataggattcaatttcttc |
937300 |
T |
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| Q |
378 |
aatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgag |
477 |
Q |
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| T |
937301 |
aatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgag |
937400 |
T |
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| Q |
478 |
tcacag |
483 |
Q |
| |
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||||| |
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| T |
937401 |
gcacag |
937406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 456
Target Start/End: Complemental strand, 7584526 - 7584365
Alignment:
| Q |
301 |
attgcacaatcacaagcaattagagattagtcatgctatta---catga-gagtgaaaattaaacaggattcaatt--tcttgaatgacattctttctgt |
394 |
Q |
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||||||||||||||||| ||| ||||||| ||||||||||| ||| | || | |||||||| ||||||||||| ||||||| |||||||||| | |
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| T |
7584526 |
attgcacaatcacaagctattggagattaatcatgctattattacattaagaaaggaaattaaataggattcaatttatcttgaaagacattctttagat |
7584427 |
T |
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| Q |
395 |
aacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatgg |
456 |
Q |
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| T |
7584426 |
gacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaagaatgg |
7584365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 7586030 - 7585961
Alignment:
| Q |
362 |
aggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgtt |
431 |
Q |
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| T |
7586030 |
aggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgtt |
7585961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 38410495 - 38410442
Alignment:
| Q |
402 |
acagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatg |
455 |
Q |
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| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatg |
38410442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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