View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10020_low_5 (Length: 321)
Name: NF10020_low_5
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 27190593 - 27190295
Alignment:
| Q |
1 |
tacatggacacctactttttgtacactcgcaaaacacctagttaacgacattaaaaaatgtggttaattcagttgagtaaattgttaacccaattcacga |
100 |
Q |
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| T |
27190593 |
tacatggacacctactttttgtacactc---aaacacctggttaaagacgttaaaaaatgtcgttaattcagttgaataaatttttaattcaattcaaaa |
27190497 |
T |
|
| Q |
101 |
ccaaatttgtgattaat--aattcaactacatgaactacccataattatcaatgtaaatcaaattaaccatatttttcacataattaaccttgtttttat |
198 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27190496 |
gcaaatttgtgattaattcaattcaactacatggactacccataattatcaatgtaaatcaaattaaccatatttttcacataattaaccttgtttttat |
27190397 |
T |
|
| Q |
199 |
gaaaaagtggttgtccatgaaacattttttatctcaataaactatcatcaaccgaaaatatataactcgtaactcataataatataggagattaactgct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27190396 |
gaaaaagtggttgtccatgaaacattttttatctcaataaactatcatcaaccgaaaatatataactcgtaactcataataatataggagattaactgct |
27190297 |
T |
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