View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10020_low_7 (Length: 259)
Name: NF10020_low_7
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13160769 - 13160529
Alignment:
| Q |
1 |
tatatcgcgcgggttaccaacatggctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160769 |
tatatcgcgcgggttaccaacatggctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtat |
13160670 |
T |
|
| Q |
101 |
gacctaacatcatttctaaaagaacctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160669 |
gacctaacatcatttctaaaagaacctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagac |
13160570 |
T |
|
| Q |
201 |
cttgagctcttatcgcttgatatatattttgggtggcaggt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160569 |
cttgagctcttatcgcttgatatatattttgggtggcaggt |
13160529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 13152493 - 13152700
Alignment:
| Q |
25 |
gctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtatgacctaacatcatttctaaaagaa |
124 |
Q |
| |
|
||||||||||| ||||| ||| ||| |||||||||| ||||||||| ||||| || || | ||||| | |||||||| ||||| ||||||| ||| |
|
|
| T |
13152493 |
gctaaaataagagtaaatatttgcaaataaaggtgcatttgcatatactaagtagcctataattggatccaaatatgacctcacatcgcttctaaatgaa |
13152592 |
T |
|
| Q |
125 |
cctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagaccttgagctcttatcgcttgatata |
224 |
Q |
| |
|
|||||||| || ||| | ||| |||| || | ||||||||||||||| |||||||||||||||||||| || ||| || |||||||| |||||||||| |
|
|
| T |
13152593 |
cctttagacggcgggtacgaagttcctatcatggtcatgtcaatagccgttgaaaccttgatttgatcgtgcagatttttcgctcttattgcttgatata |
13152692 |
T |
|
| Q |
225 |
tattttgg |
232 |
Q |
| |
|
| |||||| |
|
|
| T |
13152693 |
tgttttgg |
13152700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 13145729 - 13145936
Alignment:
| Q |
25 |
gctaaaataagggtaaacattgacaagtaaaggtgcacctgcatataccaagtatccaatgaaaggatctaggtatgacctaacatcatttctaaaagaa |
124 |
Q |
| |
|
||||||||||| ||||| ||| ||| |||||||||| ||||||||| ||||| || || | ||||| | |||||||| ||||| ||||||| ||| |
|
|
| T |
13145729 |
gctaaaataagagtaaatatttgcaaataaaggtgcatttgcatatactaagtagcctataattggatccaaatatgacctcacatcgcttctaaatgaa |
13145828 |
T |
|
| Q |
125 |
cctttagatggagggaatgaatttccaataagggtcatgtcaatagcggttgaaaccttgatttgatcatgaagaccttgagctcttatcgcttgatata |
224 |
Q |
| |
|
|||||||| || ||| | ||| |||| || | ||||||||||||||| |||||||||||||||||||| |||| | || |||||||| ||||| |||| |
|
|
| T |
13145829 |
cctttagacggcgggtacgaagttcctatcatggtcatgtcaatagccgttgaaaccttgatttgatcttgaaaatttttcgctcttattgcttggtata |
13145928 |
T |
|
| Q |
225 |
tattttgg |
232 |
Q |
| |
|
| |||||| |
|
|
| T |
13145929 |
tgttttgg |
13145936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University