View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10020_low_9 (Length: 239)
Name: NF10020_low_9
Description: NF10020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10020_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 37687598 - 37687743
Alignment:
| Q |
73 |
caagcttataaatggtaattaatgtatgaatttatttttagaaagtatatatttcaaaagtaaaatagaggtgctaaataattggatctgagtgtaatat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37687598 |
caagcttataaatggtaattaatgtatgaatttatttttagaaagtatatatttcaaaagtaaaatagaggtgctagataattggatctgagtgtaatat |
37687697 |
T |
|
| Q |
173 |
ccaataacacaaagaaaaactatgctatgctgcgtttgttgtacatgttac |
223 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37687698 |
ccaataacacagagaaaaa-----ctatgctgcgtttgttgtacatgttac |
37687743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 37697920 - 37697775
Alignment:
| Q |
73 |
caagcttataaatggtaattaatgtatgaatttatttttagaaagtatatatttcaaaagtaaaatagaggtgctaaataattggatctgagtgtaatat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37697920 |
caagcttataaatggtaattaatgtatgaatttatttttagaaagtatatatttcaaaagtaaaatagaggtgctagataattggatctgagtgtaatat |
37697821 |
T |
|
| Q |
173 |
ccaataacacaaagaaaaactatgctatgctgcgtttgttgtacatgttac |
223 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
37697820 |
ccaataacacagagaaaaacta-----tgctgcgtttgttgtacatgttac |
37697775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 55221784 - 55221732
Alignment:
| Q |
85 |
tggtaattaatgtatgaatttatttttagaaagtatatatttcaaaagtaaaa |
137 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
55221784 |
tggtaattaatgtaaggatctatttatagaaagtatatatttgaaaagaaaaa |
55221732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University