View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10021_high_11 (Length: 224)
Name: NF10021_high_11
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_high_11 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 9841271 - 9841080
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
9841271 |
agactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgcaatgaagtgggtagac |
9841172 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataat |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9841171 |
cacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggaacaactaat |
9841080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10583024 - 10582843
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10583024 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagac |
10582925 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10582924 |
cacttgagggaaatgtagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
10582843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 10129336 - 10129157
Alignment:
| Q |
20 |
actcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagacca |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
10129336 |
actcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtagtcca |
10129237 |
T |
|
| Q |
120 |
cttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10129236 |
cttgagggaaatgcagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttttcagaatcaattttgg |
10129157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 10431697 - 10431888
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
10431697 |
agactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgcaatgaagtgggtagac |
10431796 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaaataat |
209 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10431797 |
cacttgatggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggcacaactaat |
10431888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10034416 - 10034235
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
10034416 |
agactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgcaatgaagtgggtagtc |
10034317 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10034316 |
cacttgagggaaatgcagtgagagaagaaagagaattgagttccaagtgtgtaagacaagtgcttctcaaaatcaattttgg |
10034235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 9852152 - 9851971
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9852152 |
agactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgcaatgaagtgggtagac |
9852053 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9852052 |
cacttgatggaaatgcattgagagaagaaagtgaatcgagtctcaagtgtgtaagacaagtgcttctcataatcaattttgg |
9851971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 10361461 - 10361638
Alignment:
| Q |
22 |
tcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccact |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10361461 |
tcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgcaatgaagtgggtagaccact |
10361560 |
T |
|
| Q |
122 |
tgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10361561 |
tgagggaaatgcagtgagagaagaaagattaccgagtcccaagagtgtaagacaagtgcttctcagaatcaattttgg |
10361638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10519898 - 10519717
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
10519898 |
agactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgcaatgaagtgggtagac |
10519799 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10519798 |
cacttgagggaaatgcagtgagagaagaaagagaatcgagtcccaagtgtgtaagacaagtgcttttcagaatcaattttgg |
10519717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 10373503 - 10373679
Alignment:
| Q |
23 |
cacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccactt |
122 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
10373503 |
cacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgcaatgaagtgggtagaccactt |
10373602 |
T |
|
| Q |
123 |
gagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373603 |
gagggaaatgcagtgagagaagaaagagaatcgagttccaagtgtgtaagacaagtgcttctcagaatcaattttgg |
10373679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 11779638 - 11779824
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11779638 |
agactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaatgaagtgggtagac |
11779737 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaa |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
11779738 |
cacttgagggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaaatgcttctcaaaatcaattttggcacaa |
11779824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10263114 - 10262933
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
10263114 |
agactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgcaatgaagtgggtagac |
10263015 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10263014 |
cacttgagggaaatgtagtgagagaaggaagagaactgagtttcaagtgtgttagacaagtgcttctcagaatcaattttgg |
10262933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10665879 - 10665698
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
10665879 |
agacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatattaagtgattgcaatgaagtgggtagac |
10665780 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10665779 |
cacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtgcttctcataatcaattttgg |
10665698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 11771647 - 11771461
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||| |||||| |||||||| |||||||| | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
11771647 |
agactcacaagtgaagtgtaatagctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtatttgcaatgaagtgggtagac |
11771548 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggtacaa |
204 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11771547 |
cacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaattttggcacaa |
11771461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 10091204 - 10091026
Alignment:
| Q |
21 |
ctcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccac |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| | || |||||||||||||||||||||||||| |
|
|
| T |
10091204 |
ctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccac |
10091105 |
T |
|
| Q |
121 |
ttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||| ||||| | || |||||||||||||| |||| |||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
10091104 |
ttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttgg |
10091026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 10198086 - 10197908
Alignment:
| Q |
21 |
ctcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccac |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| | || |||||||||||||||||||||||||| |
|
|
| T |
10198086 |
ctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccac |
10197987 |
T |
|
| Q |
121 |
ttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||| ||||| | || |||||||||||||| |||| |||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
10197986 |
ttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttgg |
10197908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 13853117 - 13853298
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||| |||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| || | |||||||||||||| ||| || |||| |
|
|
| T |
13853117 |
agactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgcaatggagttggcagac |
13853216 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||| |||||| |||||||||||| || | || |||| |||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
13853217 |
cacttgacggaaatacagtgagagatggaatatcatagagtttcaagtgttgaagaaaagtgcttctcaaaatcaattttgg |
13853298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 11244188 - 11244305
Alignment:
| Q |
27 |
agtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccacttgagg |
126 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||| | ||||| || | ||||||||||| |||||| ||||||||||||||| ||| | |
|
|
| T |
11244188 |
agtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggtagaccatttgtag |
11244287 |
T |
|
| Q |
127 |
gaaatgcagtgagagatg |
144 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11244288 |
gaaatgcagtgagagatg |
11244305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 10502995 - 10502815
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| ||| || ||||||||||||||||| || ||||| |||||| ||||| ||||||||||||| |
|
|
| T |
10502995 |
agactcacaagcaatgtgtaattgctccacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggtagac |
10502896 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
|| | |||||| |||||||||||| || | || |||| ||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
10502895 |
catctttgggaaacacagtgagagatggaatatcatagagttccaagtgttgaagacaagtgcttctca-aatcatttttgg |
10502815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 13397889 - 13397764
Alignment:
| Q |
22 |
tcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattt-tctaatatgaagtgattgcaatgaagtgggtagaccac |
120 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| | | ||| | |||||||| ||| | |||| || ||||||| ||||| |||||||| |||||| |
|
|
| T |
13397889 |
tcacaagtgatgtgtaattgctccatgtttcaggacgcaagaatgctaaattctgacactcatcta-tacgaagtgactgcaacgaagtgggaagaccat |
13397791 |
T |
|
| Q |
121 |
ttgagggaaatgcagtgagagatgaaa |
147 |
Q |
| |
|
||| ||||||||||||||||| |||| |
|
|
| T |
13397790 |
ttgctggaaatgcagtgagagaggaaa |
13397764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 10531074 - 10530973
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||| | ||| | ||| |||||||| || |||| |||||| ||||||||||||||||||| |
|
|
| T |
10531074 |
agactctcaagcgatgtgtatctgctccacgtttcaggaggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagac |
10530975 |
T |
|
| Q |
118 |
ca |
119 |
Q |
| |
|
|| |
|
|
| T |
10530974 |
ca |
10530973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 10967364 - 10967488
Alignment:
| Q |
23 |
cacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccactt |
122 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||| | ||| | |||||||| ||| | ||||| |||||| | |||||||||||| || ||| | |
|
|
| T |
10967364 |
cacaagtgatgtgtaattgctccacatttccggaggcaagaatgctaaattcttacagtcggaaatatcaagtgacttcaatgaagtgggaagtccatta |
10967463 |
T |
|
| Q |
123 |
gagggaaatgcagtgagagatgaaa |
147 |
Q |
| |
|
|| | ||||||||||||||| |||| |
|
|
| T |
10967464 |
gatgaaaatgcagtgagagaggaaa |
10967488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 55258 - 55439
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
55258 |
agactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtagtc |
55357 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55358 |
cacttgagggaaatgcagtgagagaagaaagtgaatggagtttcaagtgtgtaagacaagtgcttttcagaatcaattttgg |
55439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 26909297 - 26909120
Alignment:
| Q |
22 |
tcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagaccact |
121 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||| | ||| | || ||||||||||||||||||||||||||| |
|
|
| T |
26909297 |
tcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccact |
26909198 |
T |
|
| Q |
122 |
tgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttgg |
199 |
Q |
| |
|
|||||| ||||| | || |||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
26909197 |
tgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacatgtgcttctcagaatcaattttgg |
26909120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 17850582 - 17850756
Alignment:
| Q |
18 |
agactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagac |
117 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||||| | |||||||||||||| ||| | |||||||||||||| |||||||||||| || || |
|
|
| T |
17850582 |
agactcgcaagtgatgtgtaattgttccacgtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatgaagtgagttgaa |
17850681 |
T |
|
| Q |
118 |
cacttgagggaaatgcagtgagagatgaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatca |
192 |
Q |
| |
|
|| | ||||||||||||||||| | || | || |||| |||||||| |||||||||||| |||| ||||| |
|
|
| T |
17850682 |
catccgtcggaaatgcagtgagagacggaatatcattgagtgtcaagtgttgaagacaagtgctcctcataatca |
17850756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 11487426 - 11487342
Alignment:
| Q |
34 |
tgtagttgctccacgtttcaggaggtaggaaggataaattctcacattttctaatatgaagtgattgcaatgaagtgggtagacc |
118 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||| | || | |||||||||||||||||| |||||||| |
|
|
| T |
11487426 |
tgtaattgctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaaagtgattgcaatgaagtaggtagacc |
11487342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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