View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10021_high_4 (Length: 405)
Name: NF10021_high_4
Description: NF10021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10021_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 152 - 366
Target Start/End: Complemental strand, 22459858 - 22459643
Alignment:
| Q |
152 |
gaggtgtatacaccctcaagggtgtacacaaaacattttcctaaaaaattatgtcggtataaaattgtatagctgtaatcaagnnnnnnnnnnnnnnn-g |
250 |
Q |
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| T |
22459858 |
gaggtgtatacaccctcaagggtgtacacaaaacattttcctaaaaaattatgtcggtataaaattgtatagctgtaatcaagaaaaaacaaaaaaaaag |
22459759 |
T |
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| Q |
251 |
ttgtatagctaacatgcattgtataattactattacatctaatacgactaattaaatcatatgatcaacaacttgctcttgtaagacaaaattgctcaac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22459758 |
ttgtatagctaacatgcattgtataattactattacatctaatacgactaattaaatcatatgatcaacaacttgctcttgtaagacaaaattgctcaac |
22459659 |
T |
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| Q |
351 |
aaagacaaaatttaat |
366 |
Q |
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|||||||||||||||| |
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| T |
22459658 |
aaagacaaaatttaat |
22459643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 152 - 366
Target Start/End: Complemental strand, 22482839 - 22482624
Alignment:
| Q |
152 |
gaggtgtatacaccctcaagggtgtacacaaaacattttcctaaaaaattatgtcggtataaaattgtatagctgtaatcaagnnnnnnnnnnnnnnn-g |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22482839 |
gaggtgtatacaccctcaagggtgtacacaaaacattttcctaaaaaattatgtcggtataaaattgtatagctgtaatcaagaaaaaacaaaaaaaaag |
22482740 |
T |
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| Q |
251 |
ttgtatagctaacatgcattgtataattactattacatctaatacgactaattaaatcatatgatcaacaacttgctcttgtaagacaaaattgctcaac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22482739 |
ttgtatagctaacatgcattgtataattactattacatctaatacgactaattaaatcatatgatcaacaacttgctcttgtaagacaaaattgctcaac |
22482640 |
T |
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| Q |
351 |
aaagacaaaatttaat |
366 |
Q |
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|||||||||||||||| |
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| T |
22482639 |
aaagacaaaatttaat |
22482624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 22459969 - 22459890
Alignment:
| Q |
41 |
acattcattcaacactctactttctctgtatctcttatcatatgatatcacttgagtgaaagatcacttcaatcatatca |
120 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22459969 |
acatttattcaacactttactttctctgtatctcttatcatatgatatcacttgggtgaaagatcacttcaatcatatca |
22459890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 22482950 - 22482871
Alignment:
| Q |
41 |
acattcattcaacactctactttctctgtatctcttatcatatgatatcacttgagtgaaagatcacttcaatcatatca |
120 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22482950 |
acatttattcaacactttactttctctgtatctcttatcatatgatatcacttgggtgaaagatcacttcaatcatatca |
22482871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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